FMO03437.5prime Sequence
654 bp (654 high quality bases) assembled on 2008-07-14
> FMO03437.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTCACTGAAAAG
TGTATTTCTAAGTGCTCTTCGGAGTATTACTATGCCCGCTGTGCCGCTCC
AGACTTCTAGGATACACACGAGCGCTTGCTGGCGGAAGGCGGAGGACCGC
AAGGAAATGCTGGCATCTTTACCGGCCAAAGACGAAGGAACCGTGGGCGA
AAAGACCGTGGACATCGACACACTTATCAACCGCAAGGCTAAGTTTTTCC
CGGATGCCAGCACCGCCAACACGTTATTCAATGGAATACCCTTCAACGAG
CTGCCCATCTGCAACATTCGCGTTTCACCCAACAACACAATTATTTCCGT
CACGGATCACAAAGGAGTCCTCCGGCTGATACGATCCTGTGGAATTGAGG
GATTCAAAAACACTCGCAAGGGAACCAACATAGCAGCTCAAGCTACAGCG
GTTACCATTAGTGGAAAAGCCATTGAATTGGGCTGGAAGACAGTGCGAGT
AAAGGTTCGTGGTCTTGGCCCTGGAAGAATGTCGGCCATCAAAGGACTGC
AAATGGGTGGGCTGAACATCGTTTCCATTACCGACAACACACATGTTTCC
TTCAATCCTCCAAGACCCCGAAAGCAGAGAAGTCTTGCAAGCTTTCTAGA
CCAT
FMO03437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS11-RA | 729 | CG5184-RA | 67..666 | 37..636 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17072798..17072994 | 37..233 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 17073052..17073184 | 233..365 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 17073627..17073732 | 531..636 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 17073236..17073338 | 363..465 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 17073502..17073567 | 466..531 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:16 has no hits.
FMO03437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:13 Download gff for
FMO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS11-RA | 68..670 | 37..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:58 Download gff for
FMO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS11-RA | 67..669 | 37..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:19 Download gff for
FMO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS11-RA | 67..669 | 37..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:19 Download gff for
FMO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17072798..17072994 | 37..233 | 100 | -> | Plus |
| 3R | 17073053..17073183 | 234..364 | 100 | -> | Plus |
| 3R | 17073238..17073338 | 365..465 | 100 | -> | Plus |
| 3R | 17073502..17073567 | 466..531 | 100 | -> | Plus |
| 3R | 17073628..17073735 | 532..640 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:58 Download gff for
FMO03437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12898520..12898716 | 37..233 | 100 | -> | Plus |
| arm_3R | 12898775..12898905 | 234..364 | 100 | -> | Plus |
| arm_3R | 12898960..12899060 | 365..465 | 100 | -> | Plus |
| arm_3R | 12899224..12899289 | 466..531 | 100 | -> | Plus |
| arm_3R | 12899350..12899457 | 532..640 | 98 | | Plus |
