Clone FMO03438 Report

Search the DGRC for FMO03438

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:34
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13126-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03438.5prime Sequence

416 bp (107 high quality bases) assembled on 2008-07-21

> FMO03438.5prime
CGTATAGCATACATTAAACAAAGTTATCAATCGACATGAATTTTTCACTG
AATTTCCCAACGAGAAATCTAGTGCCACGACTGCACCGATTCACCAACAA
GATTGCAGTGGACGTTGAACCAGCTGTGGTCTCCGCCCTGGAACATGCCA
CACTGAATCCCAAAAAACATCCCGGAATAGTGGGACCCAATCATGTGGAA
CTGCCGAAACAATTGAATGATACGCTAAAGCGCATCGTGGGGGATCATCC
CGTCAAAAAACTAATCCACGATGGCAGCTTCTCATCGACTATATCCATCC
CGCCATCCACCCCCCAAGCTGGAAGAGATTGACAATAAGATACGCATCGT
TATCCAACAGGTCAACACGAAGATGCCTCGGGATCGCCTACCTTCACTAG
GACAAAGAAGAGGCCT

FMO03438.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RB 1989 CG13126-RB 89..468 36..414 1455 92.7 Plus
CG13126-RA 1633 CG13126-RA 89..468 36..414 1455 92.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953729..9954093 398..36 1395 93.4 Minus
Blast to na_te.dros performed on 2014-11-28 19:26:20 has no hits.

FMO03438.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:48 Download gff for FMO03438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..462 36..408 92   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:37 Download gff for FMO03438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 51..424 36..408 92   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:57 Download gff for FMO03438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 89..462 36..408 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:57 Download gff for FMO03438.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9953720..9954093 36..408 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:48 Download gff for FMO03438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9953720..9954093 36..408 92   Minus