FMO03439.5prime Sequence
824 bp (824 high quality bases) assembled on 2008-07-21
> FMO03439.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCCCAGTTTCAAG
GATAAAGTTATAATCGTGACCGGAGCCAGTTCGGGAATTGGAGCGGGTAC
TTCGGTGCTCTTGGCTAAACTGGGAGGCCTGCTCACCATCGTGGGCAGGA
ATTTGGATAAGCTCAACGAGACCGCGGAGCAGATAGTGGCAGCTGGAGGA
GCGCCAGCACTCCAGGTGGCGGCGGACATAAACAGCGAGTCCGACGTCCA
GGGCATCGTCTCCGCCACATTGGCCAAGGACGGTCGCATCGACGTGCTGG
TGAACAACGCCGGAATCTTGGAGCTAGGCAGCATCGAGAACACCAGTCTG
GAGCAGTTTGACCGCGTTATGAACACCAACGTCCGGTCGCTCTACCAGCT
GACCCACCTGGTCACACCGGAGCTAATCAAGACCAAGGGCAACATTGTAA
ACGTGTCTAGTGTGAACGGCATCCGTTCCTTTCCCGGAGTCTTAGCATAC
AATGTTTCCAAGGCTGCCGTGGATCAGTTCACCAGGTGCGTGGCTCTGGA
GCTAGCTCCCAAGGGTGTGCGTGTGAACTCCGTGAATCCCGGCGTAATCA
TCACCGAGCTGCAGCGTCGTGGTGGACTGGACCAGGAAGCCTACGTCAAG
TTCCTCGAGCACGCCAAGGTCACCCATGCCCTGGGTCGACCCGGCGAAGT
CAAGGAGGTGGCTGCGGCCATTGCATTCCTGGCCAGCGACGAGGCCAGCT
TCAGCACCGGTATCAGCCTGCCCGTGGACGGCGGTCGCCATGCCATGTGC
CCCAGAGCAAGCTTTCTAGACCAT
FMO03439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12171-RA | 1014 | CG12171-RA | 64..836 | 34..806 | 3850 | 99.9 | Plus |
| CG31548-RA | 952 | CG31548-RA | 303..811 | 294..802 | 985 | 79.8 | Plus |
| CG31549-RB | 991 | CG31549-RB | 75..832 | 45..802 | 955 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5633690..5634462 | 34..806 | 3850 | 99.9 | Plus |
| 3R | 32079331 | 3R | 5636042..5636550 | 802..294 | 985 | 79.6 | Minus |
| 3R | 32079331 | 3R | 5632405..5633162 | 45..802 | 955 | 75.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:41 has no hits.
FMO03439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:24 Download gff for
FMO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12171-RA | 50..840 | 22..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:15 Download gff for
FMO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12171-RA | 53..843 | 22..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:03 Download gff for
FMO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12171-RA | 50..840 | 22..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:03 Download gff for
FMO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5633676..5634466 | 22..811 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:24 Download gff for
FMO03439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1459398..1460188 | 22..811 | 98 | | Plus |
