FMO03442.5prime Sequence
1234 bp (897 high quality bases) assembled on 2008-07-21
> FMO03442.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCCACATGATCTGGTCT
GGCAACGCCAGATATTCAAATGTTCAGAATTCGAGCATGGTGCCTCCGTC
ACGACCCAATGTCACCCGTCTGTCGGACGAGTCCGTGATGCTGCGCTGGA
GTGTGCCACAAAACTCTGGACTCCATATCACCTTTTTCAAGGTGCAGTAT
CGCATGTTGGGCGACGGAAAAAATCGGAGGAAGAACTGGCAGACGACCAG
CGACAATATCCCGTACGGAAACGCGCACGGATCCGGGCCTGGCCAGGGGA
ACAATCACTGGCGGGCGCGGAACCGGGACAGGGAGTATGAAATGGGCAAT
CCGCCCAAGAACTTCACCTCCTCCGTTACGGGACTGACCGCCGGCAAGTA
CTACCGCTTCCGGATCGTGGCGGTGTACTCCAATAACGACAACAAGGAGG
GCAACACCTCCCTCAAGTTCTTCCTGCAGAATGGAACGTCCAAGTCGAAT
CTGCCAGTGCCGGAACTACGCGAGGTGGAGACGCTTTCCGAGTCGGCCGT
GGTGCTCCATTGGTCCCTGGTATCCTCGACTCAAAATGAGGATATAGACG
GGTACTATGCCTACTATAGGCCAGCGGACTCATCAGCGGAGTATTTGAAG
GCCACGGTGGATGGCGGAATGAGCAGGAGCTTCAAGATAGACCTCCTTCG
TCCAGGAACCCCTTATGAGTTCAAATTGCAATCGTTCAACTCCGACGCAT
CCTCTGAATTCTGTGCTATTCGGCAAGCGAGGACCAGAAAAACGCACGAG
CAACCGGCTTCATCTTCGGCCACGCCAGTGCCAGCCAATAAGGAGTGGAA
CAGCACCAGAACTCCTTATATCCACTGATCGCAGGTGCCGCTGGCGGAGG
CATTCTACTCCTCATCGCCTCATTGGTGGTCTGCCTTTGCCTATAGAGAC
GGGAAAAATCTCAGCCAGAAGATGAGCACCAACCGCAATTGAACACATTC
ATGCGACTTTGTACCTCCGCCGTCTGTGAGTTTGTGCCCACCACAACAGT
TGGCGATGTTATGCGCCTCAACGATGATTCCCGAGATGATATATAACGCC
GAATCCGCTGGCCCAAGAACGCAGTCGAATAGATACACCTCTTGAACTGC
ATCGAATTGCCTACCCACGCCTAGCCGTTACATCGCTCTGACTGCCTCAC
TTCGAGTTGTCATAAGGCGCAACGTGTGATTCTA
FMO03442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boi-RA | 2721 | CG32796-RA | 194..1340 | 39..1178 | 4855 | 95.7 | Plus |
| boi-RF | 4509 | CG32796-RF | 2025..3128 | 82..1178 | 4640 | 95.6 | Plus |
| boi-RE | 4316 | CG32796-RE | 1832..2935 | 82..1178 | 4640 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2446890..2447597 | 789..82 | 3465 | 99.3 | Minus |
| X | 23542271 | X | 2446647..2446824 | 966..790 | 795 | 97.8 | Minus |
| X | 23542271 | X | 2447657..2447699 | 81..39 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:51 has no hits.
FMO03442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:20 Download gff for
FMO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 182..1283 | 33..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:46 Download gff for
FMO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 182..1283 | 33..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:08 Download gff for
FMO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boi-RA | 186..1287 | 33..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:08 Download gff for
FMO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2446638..2446824 | 790..976 | 95 | <- | Minus |
| X | 2446890..2447597 | 82..789 | 99 | <- | Minus |
| X | 2447657..2447707 | 33..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:20 Download gff for
FMO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2340671..2340857 | 790..976 | 95 | <- | Minus |
| arm_X | 2340923..2341630 | 82..789 | 99 | <- | Minus |
| arm_X | 2341690..2341740 | 33..81 | 94 | | Minus |
