FMO03450.3prime Sequence
744 bp (-735 high quality bases) assembled on 2008-07-21
> FMO03450.3prime
CGGGTGAATTAGCATTTTGGTCCGCCATGATTCCGGACAACGAGAGACAG
AAGGGTAACTCCAATGATGTTCAGCAGCCAGATGATGGCTACGCGAACTT
GTGAGGCACAGTAGAAGAATCGATGGTGTCGAGAAGTATACGCCGAAGGG
CTCCATTAGAGTCCAGACATTACTAACAATTTCGCTATATGAGACTCCAA
TGTAATCAAGTGCATCTTTCATGGACGTTGTATGACTTATGTCGATTCCA
TGATACACCGTGGCCACCACATCTAGGATACTGCCAGCTAGCACGGATAG
GAACCAGGGCCAATAGACCACTCCGGAGATCAGCTTGGTGGTGCGATTGC
ACAAAGTGGTTATTACCAACACCGAAGTGGCTACCCAGACTCCGCTAATA
ACTGCGTAGGTTATCATGAAGATGAACTCCCGGTTGGTAATGGCATAGGA
CGTCTGCCAATCTATGTTCAAACTAAATTGTTCGTCTGCCACCTTCAGCA
CCGGCTCACCACATTCCTCCTGTGCAAAGTAAATGAGCTCCATGGCGTAC
TTGAAGGGATTTTCGCTGAAATCAGTAACGCCATCCGGACAATCTCGGAA
GGTGATGCCCCAGATGGACAAGCCCAAGTAGGCAACTCCCTGGACGAGTA
TGACAATTGCCATGAAGAGTATAAAGCACTTGGAAAATCCAGTGCCCATG
CCGGCCATGTCGACTGATAACTTCGTATAATGTATGCTATACGA
FMO03450.3prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1246-RD | 1840 | CG1246-RD | 409..1114 | 708..1 | 3400 | 98.9 | Minus |
| CG1246-RC | 1674 | CG1246-RC | 243..948 | 708..1 | 3400 | 98.9 | Minus |
| CG1246-RE | 1527 | CG1246-RE | 96..801 | 708..1 | 3400 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2649256..2649479 | 226..1 | 940 | 96.5 | Minus |
| 3L | 28110227 | 3L | 2648856..2649017 | 521..360 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 2649072..2649205 | 359..226 | 670 | 100 | Minus |
| 3L | 28110227 | 3L | 2648664..2648787 | 645..522 | 620 | 100 | Minus |
| 3L | 28110227 | 3L | 2648532..2648596 | 708..644 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:36 has no hits.
FMO03450.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:48 Download gff for
FMO03450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RB | 211..923 | 1..716 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:17 Download gff for
FMO03450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RB | 209..921 | 1..716 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:01 Download gff for
FMO03450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1246-RE | 89..801 | 1..716 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:01 Download gff for
FMO03450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2648525..2648594 | 646..716 | 95 | -> | Minus |
| 3L | 2648664..2648787 | 522..645 | 100 | -> | Minus |
| 3L | 2648856..2649017 | 360..521 | 100 | -> | Minus |
| 3L | 2649072..2649205 | 226..359 | 100 | -> | Minus |
| 3L | 2649257..2649479 | 1..225 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:48 Download gff for
FMO03450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2648525..2648594 | 646..716 | 95 | -> | Minus |
| arm_3L | 2648664..2648787 | 522..645 | 100 | -> | Minus |
| arm_3L | 2648856..2649017 | 360..521 | 100 | -> | Minus |
| arm_3L | 2649072..2649205 | 226..359 | 100 | -> | Minus |
| arm_3L | 2649257..2649479 | 1..225 | 96 | | Minus |
