FMO03452.5prime Sequence
1021 bp (1001 high quality bases) assembled on 2008-07-21
> FMO03452.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTGTGACGAAGA
AGTTGCTGCTCTGGTTGTCGACAACGGCTCTGGCATGTGCAAGGCCGGAT
TTGCCGGAGACGATGCTCCCCGCGCCGTCTTCCCATCGATTGTGGGACGT
CCCCGTCACCAGGGTGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGT
GGGTGATGAGGCGCAGAGCAAGCGTGGTATCCTCACCCTGAAGTACCCCA
TTGAGCACGGTATCGTGACCAACTGGGACGATATGGAGAAGATCTGGCAC
CACACCTTCTACAATGAGCTGCGTGTGGCACCCGAGGAGCACCCCGTGCT
GCTGACCGAGGCCCCGCTGAACCCCAAGGCCAACCGTGAGAAGATGACCC
AGATCATGTTCGAGACCTTCAACACACCCGCCATGTATGTGGCCATCCAG
GCTGTGCTCTCGCTGTACGCCTCCGGTCGTACCACCGGTATCGTTCTGGA
CTCCGGCGATGGTGTCTCCCACACCGTGCCCATCTACGAGGGTTATGCCC
TTCCCCATGCCATCCTGCGTCTGGATCTGGCTGGTCGCGATTTGACCGAC
TACCTGATGAAGATCCTGACCGAGCGCGGTTACTCTTTCACCACCACCGC
TGAGCGTGAAATCGTCCGTGACATCAAGGAGAAGCTGTGCTATGTTGCCC
TCGACTTTGAGCAGGAGATGGCCACCGCTGCCAGCAGCTCCTCGTTGGAG
AAGTCCTACGAGCTGCCCGACGGACAGGTGATCACCATCGGCAACGAGCG
TTTCCGCTGCCCCGAGGCCCTGTTCCAGCCCTCGTTCTTGGGAATGGAGG
CTTGCGGCATCCACGAGACCACCTACAACTCCATCATGAAGTGTGATGTG
ATAATCCGTAAGGATCTGTATGCCAACACCGTGCTGGTCCGGTGGCCACC
ACCATGTACCCTGTCATCGCCGACCGTATGCAGAAGGAAATCACCGGCCC
TGGCCCGTCCAACCATGAAGA
FMO03452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act5C-RE | 2863 | CG4027-RE | 162..1143 | 37..1021 | 4715 | 99 | Plus |
| Act5C-RD | 1928 | CG4027-RD | 162..1143 | 37..1021 | 4715 | 99 | Plus |
| Act5C-RC | 2252 | CG4027-RC | 162..1143 | 37..1021 | 4715 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5902698..5903655 | 37..996 | 4625 | 99.3 | Plus |
| 3R | 32079331 | 3R | 13426604..13427561 | 37..996 | 3275 | 89.9 | Plus |
| 2R | 25286936 | 2R | 20944843..20945760 | 76..995 | 3225 | 90.5 | Plus |
| 3R | 32079331 | 3R | 15440616..15441540 | 37..963 | 2840 | 87.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:08 has no hits.
FMO03452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:21 Download gff for
FMO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RA | 162..1142 | 37..1020 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:01 Download gff for
FMO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 159..1139 | 37..1020 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:58 Download gff for
FMO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act5C-RC | 162..1142 | 37..1020 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:58 Download gff for
FMO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5902698..5903678 | 37..1020 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:21 Download gff for
FMO03452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5796731..5797711 | 37..1020 | 98 | | Plus |
