FMO03454.5prime Sequence
1202 bp (1058 high quality bases) assembled on 2008-07-21
> FMO03454.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAGCCTGACT
GTGCTCTCGCCACCGCAACGTTTTAAGCGAATCCTGCAAGCCATGATGTT
AGCCGTCGCCGTCGTCTATATGACCCTACTGCTCTACCAGAGCGCCTACG
GATATCCGGGCATCCAAGTGCCGCACAGCCAGGTGGATGCCCTTGCCAGC
GAAGCCGTGACCACACATCGCGACCAGCTGCTCCAGGACTACGTGCAGTC
CTCCACGCCCACCCAGCCGGGGGCTGGAGCTCCGGCCGCCTCCCCCACCA
CCGTCATAATCCGCAAGGATATACGCAGCTTCAATTTCAGCGACATCGAG
GTCAGTGAGCGGCCCACGGCCACGCTGCTAACAGAATTGGCCAGAAGGAG
CCGGAATGGGGAACTGCTCCGCGATCTGTCCCAAAGAGCGGTGACGGCGA
CACCACAGCCGCCGGTCACCGAGTTGGATGACATTTTCATCAGCGTAAAG
ACGACGAAGAACTATCACGACACCCGGCTGGCGTTGATCATCAAGACCTG
GTTCCAATTGGCCCGCGATCAGACCTGGTTCTTCACGGACACCGATGATC
ACTACTACCAGGAGAAGACAAAGGGCCATCTCATCAACACGAAATGCTCA
CAGGGCCATTTTCGCAAGGCGCTTTGCTGCAAAATGTCCGCTGAATTGGA
TGTCTTCCTGGAGAGTGGCAAAAAGTGGTTCTGTCACTTCGACGATGACA
ACTATGTCAATGTGCCGAGGCTGGTCAAACTGCTGGACGAGTATAGCCCC
AGTGTGGATTGGTATCTGGGCAAGCCGAGCATCTCGTCGCCGCTGGAGAT
CCACTTGGACAGCAAGAACACGACAACAAACAAGAAGATAACCTTCTGGT
TCGCCACTGGCGGCGCTGGCTTCTGCCTCAGTCGAGCCCTGACTTTAAAA
TGCTACCCATAGCAGTGGTGCAAGTTTATCAGCATTGGCGACAGATACGT
TTCCGGATGATGTCCACATGGGTTTTATTATGAACACCTTCTGAAAGTCC
TCTAACGTGTGACACTCCACTCGCATTTGGAAGCCCATGAAGTCATACGC
CAGATTACGTTCAGACAGGGTCTTCAGCTATGGCCACATGAAAACCATGG
ACGGATCAGGTAACGCTCCAATAGAAAACGCATCAAGGCCTCTATCTCCG
TG
FMO03454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fng-RA | 1959 | CG10580-RA | 212..1337 | 36..1144 | 5055 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20943564..20943968 | 572..168 | 2025 | 100 | Minus |
| 3L | 28110227 | 3L | 20927709..20927847 | 863..725 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 20949167..20949301 | 170..36 | 675 | 100 | Minus |
| 3L | 28110227 | 3L | 20926701..20926873 | 1031..864 | 570 | 95.4 | Minus |
| 3L | 28110227 | 3L | 20935411..20935515 | 726..622 | 525 | 100 | Minus |
| 3L | 28110227 | 3L | 20936666..20936717 | 621..570 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:14 has no hits.
FMO03454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:28 Download gff for
FMO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1359 | 32..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:27:51 Download gff for
FMO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 206..1356 | 32..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:48 Download gff for
FMO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fng-RA | 209..1359 | 32..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:48 Download gff for
FMO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20926699..20926873 | 864..1032 | 95 | <- | Minus |
| 3L | 20927709..20927847 | 725..863 | 100 | <- | Minus |
| 3L | 20935413..20935515 | 622..724 | 100 | <- | Minus |
| 3L | 20936666..20936714 | 573..621 | 100 | <- | Minus |
| 3L | 20943564..20943968 | 168..572 | 100 | <- | Minus |
| 3L | 20949170..20949304 | 32..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:28 Download gff for
FMO03454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20919799..20919973 | 864..1032 | 95 | <- | Minus |
| arm_3L | 20920809..20920947 | 725..863 | 100 | <- | Minus |
| arm_3L | 20928513..20928615 | 622..724 | 100 | <- | Minus |
| arm_3L | 20929766..20929814 | 573..621 | 100 | <- | Minus |
| arm_3L | 20936664..20937068 | 168..572 | 100 | <- | Minus |
| arm_3L | 20942270..20942404 | 32..167 | 98 | | Minus |
