FMO03456.5prime Sequence
1232 bp (1035 high quality bases) assembled on 2008-07-21
> FMO03456.5prime
ACTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCGGAATT
CGAGGAGGACTTGCCCCACAATGGCCTGATGGACGGGATCGCCTCGGGAG
TGGGCGTTCCCGTGGAGGCACTCCGGCTGCTACTCACCATTCTGGCAGGT
TATCCGGTGGCAGCATTATATCAAAAATTTATTTCTGTTATTGCCGATAA
AACAGTGCATCACATGTTCTTTGCTGGATGCGGCGCTGGATTGTGTTACT
TTAACTATGGGCTCGACACATATCACTCACTGATAGCCATCCTAACCACC
TATTTCCTGGTACTCCTCCTGCGAAAGAAGACGCAGATATTTCTGGCCAT
CAACTTCGTTTTCCATATGAGCTACCTGCTGCTGGGATATTTCTACACGT
CCAGCAATGATTACGATATTCTGTGGACGATGCCTCACTGCATTTTGGTT
CTACGAATGATTGGCTATGGTTTTGACATCACCGACGGCCTGAAAGAGGA
GTCGGAATTGTCTAAGGACCAAAAGGAAACTGCGCTGAAGAAACCGCCCT
CTCTGCTGGAGCTCCTGGCCTTTTCCTACTTCCCCAGTGGATTTTTGGTT
GGACCGCAGTTCCCATTCCGCCGTTACAAGGCCTTTGTCGATGGCGAATT
CCGTCAGCACGAAGGAAATGTGGAAGCTGGCGTTCGTCGCTTTGGAGCTG
GTGCGTTCTATCTGATTGTGTGTCAAGTGGGATTGAGATATCTGCCCGAT
TCGTACTTCCTCACTCCGGAGTTTGCGCAAGTTTCATTCGTCAAGAGGAT
TTATTTACTCGGCTTCTGGGCCCAATTCAGTCTGTACAAGTACATATCCT
GCTGGCTGCTCACCGAGGGCGCCCTTATTGCATTGGTCTGACCTACAAGG
GCGAGGACAGAACGGACAGCCCGATTGGTCGGGCTGCAGCAATGTGAAGC
TAAAGCTGCTGGAGACTGGGACACCATGGAGCCCTACGTCAAGCTTCATT
GTAAACCCGAACCATGGGTTGGACAGATATCACAGCGACTTAGTTCCTCA
CAACCGCCAAATCAGCTATGGGCGCGATTGGGTTACTTGGCCGGACTGGC
ACGGATACCCAGCGTACTACACGACCATTTCTCTGTCAATACTGGTTGGA
CCAGAAACACAATCCGTTCCTACCAATTGGATGTACCCAGGGGCCCTTTC
ACAACGACTGACATGCTACACGCGCTCTTATA
FMO03456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nes-RC | 2231 | CG9655-RC | 138..1238 | 39..1125 | 4925 | 97.4 | Plus |
| nes-RB | 1668 | CG9655-RB | 41..1141 | 39..1125 | 4925 | 97.4 | Plus |
| nes-RA | 2377 | CG9655-RA | 154..1254 | 39..1125 | 4925 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19258685..19259571 | 1026..146 | 4080 | 98.6 | Minus |
| 3L | 28110227 | 3L | 19260113..19260224 | 150..39 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:57 has no hits.
FMO03456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:05 Download gff for
FMO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RA | 154..1250 | 39..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:17 Download gff for
FMO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RC | 138..1234 | 39..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:18 Download gff for
FMO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nes-RA | 154..1250 | 39..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:18 Download gff for
FMO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19258582..19259568 | 149..1121 | 97 | <- | Minus |
| 3L | 19260115..19260224 | 39..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:05 Download gff for
FMO03456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19251682..19252668 | 149..1121 | 97 | <- | Minus |
| arm_3L | 19253215..19253324 | 39..148 | 100 | | Minus |
