FMO03459.5prime Sequence
911 bp (911 high quality bases) assembled on 2008-07-21
> FMO03459.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAGACTACAC
CTGGATTAGCACCAACGTTTACGGATCCCTGCCCCCAGGAGCCATCCTAG
CTGGCCACGACTCCGACCAGGATCCCATCTTTGTGGGCCGTGCCTACCAC
AATGGAGAGATGCTGCCAGCGAAGGTGGTGCCCGGCAAGCAGCAGGCCTA
TGTGCCATGGGGCGGTCAGGAGATCAGCAAGCATGACTTCGAGGTCCTTG
TCGGTGATCACTTCTCCTGGATCCCGTCCAGTGGTGGATCTGTCCCGCCC
CATGCCATCCAAGTGGGCCAGACTGGCGAGGGTGAGCCCCTGTACGTGGG
CCGTGGTTACTTCCAGGGCAGCCTCACCCCCGGCAAGGTCCATCCCTCGC
ACCAGTGTTTGTACATCCCCTACGGCGGACAGGAGCACCGTCTGGAAGCC
TATGAAGTGCTGGTCCAGCCCGAGACGTGGATAGCCTCTAGCGGACGCGG
CATTGTTCCCGGAACAGTGGTTGGCGGACACGACGCCGATGGCGATCAGA
TCTATGTGGGTCGCGCCTACCACGAGGGCGATTTGCTGCCAGCCAAGGTG
ATCCCCAACAAGGGCTGTGCCTATGTGCCCTACGGAGGCGGTGAGGTTGT
GAAGCACGACTACGAGCTGCTGGCCGGATACGGGTACGGATGGGTGCACG
ACAGCCATGGCAATGTGCCCGGCAATGCCGTTCTCTGCGGCCGCACTTCC
GACGGAGAGCCCCTGTTCATCGGCCGTGCCCACCACCACGGCAGCCTCAC
TCCCGGCAAGATCCACCAGTCACACCATTGCCTCTACATCCCATTCGACG
GCGAGGAGGTCCGCATCGACCACTACGAGTTCCTGGTCAAGGCGCAAGCT
TTCTAGACCAT
FMO03459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13321-RB | 2043 | CG13321-RB | 544..1401 | 35..892 | 4275 | 99.9 | Plus |
| CG13321-RA | 1060 | CG13321-RA | 103..960 | 35..892 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12953956..12954349 | 42..435 | 1970 | 100 | Plus |
| 2R | 25286936 | 2R | 12954774..12955070 | 596..892 | 1470 | 99.7 | Plus |
| 2R | 25286936 | 2R | 12954499..12954666 | 434..601 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:23:29 has no hits.
FMO03459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:00 Download gff for
FMO03459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13321-RA | 98..972 | 27..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:10 Download gff for
FMO03459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13321-RA | 95..969 | 27..905 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:21 Download gff for
FMO03459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13321-RA | 98..972 | 27..905 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:21 Download gff for
FMO03459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12953956..12954349 | 42..435 | 100 | -> | Plus |
| 2R | 12954501..12954662 | 436..597 | 100 | -> | Plus |
| 2R | 12954776..12955082 | 598..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:00 Download gff for
FMO03459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8842281..8842587 | 598..905 | 98 | | Plus |
| arm_2R | 8841461..8841854 | 42..435 | 100 | -> | Plus |
| arm_2R | 8842006..8842167 | 436..597 | 100 | -> | Plus |
