FMO03460.5prime Sequence
704 bp (130 high quality bases) assembled on 2008-07-21
> FMO03460.5prime
TCGTATAGCATACCTTATACGAAGTTATCAATCCACATGAAGCTCTACGC
CCTGTTCTCCCTTCTGGTGGGATCTTTGGCCATTGGTCAAATTTCCGCCG
CCGGATCTCATCATCTACTTTGTTACTATGACGGCAACAGTTTTGTCCGG
GAGGGCCTCTCCAAGCTGATCCTAACCGATCTGGATCCCGCCCTGCAATA
CTGCTCCCCTCGGGTCTATTGATATGCCGGCTTTAATCCCTCAAGCAACA
AGCTGGTCACCAACAATGAGAAGTTGGACCTGGATCTGGGCAGCATCCTG
TTCCGCCAGGTGACCGGATTGAATCGCAAGTACCCAGCCCTCAAGGACCT
GCTTACCGTGGGAGGCCACAAGGACTCCGTGGATCCAGAGAACCACAAGT
ATCTGACCCTGCTGGATAGCAGCAATGCCAGGATTCCGTTCATCAACAGT
GCTCACTCGCTGGTGAAGACCTACGGTTTCGATGGCCTCGATCTCGGCTG
GTGTTTCCCCAAGAATAATCCAAATAAGGTGCACGGTAACATTGGTAAGT
TCTGGAAAGGATTCAAGAAGATCTTCACCGGTGATCATGTCGTCCAAGAG
AAGGCCGATGAGCACAAGGAGGCCTTCACCGCCCTGGTTCGCGAACTGAA
AGAACGCCTTCCGTCCAGATGGCTACATCCTGGGTCTCAATGACCTGCCC
CAAT
FMO03460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idgf4-RC | 1807 | CG1780-RC | 44..706 | 37..700 | 2725 | 94.1 | Plus |
| Idgf4-RB | 1541 | CG1780-RB | 71..733 | 37..700 | 2725 | 94.1 | Plus |
| Idgf4-RA | 1514 | CG1780-RA | 44..706 | 37..700 | 2725 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9929188..9929733 | 700..154 | 2145 | 93.2 | Minus |
| X | 23542271 | X | 9930354..9930472 | 155..37 | 565 | 98.3 | Minus |
| 2R | 25286936 | 2R | 16692663..16692840 | 455..632 | 320 | 78.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:11 has no hits.
FMO03460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:56 Download gff for
FMO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 67..740 | 29..704 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:28 Download gff for
FMO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RB | 93..767 | 27..704 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:54 Download gff for
FMO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idgf4-RA | 36..709 | 29..704 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:54 Download gff for
FMO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9929185..9929732 | 155..704 | 93 | <- | Minus |
| X | 9930355..9930472 | 37..154 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:56 Download gff for
FMO03460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9823218..9823765 | 155..704 | 93 | <- | Minus |
| arm_X | 9824388..9824505 | 37..154 | 98 | | Minus |
