FMO03461.5prime Sequence
520 bp (520 high quality bases) assembled on 2008-07-21
> FMO03461.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGATGAATA
ATCGAGTGCGAATTGTTGTGGTTGGCGATTCGGGTGTGGGGAAGACCTCC
CTGACGCACCTGATCACCCACAACGAAGCCCTCATCCGGCCCGGCTGGAC
GGTGGGCTGCAACATCCAGGTGAAGATGCATCCGTTCAGGGAGGGCACCG
CTCGCGAGTGTCCCTACTTCGTGGAGCTGTTCGATGTTGGGGGATCGCTG
AACCACAAGAACACGCGCAGCGTCTTCTATGCGGGCATCGATGGAATCAT
TCTGGTGCACGACCTTACCAACGCCAAGTCGCAGAGGCAGCTAATCGACT
GGCTGTACGAGATCGTCAACAAGGAGGGCAAGGATACGAACAAATCGAAC
GGAGCCTCCATGCCGCCATCGCCGCCCAGCCCGCTGAGCAGCTTCTCAAC
GGACAACCTCGGAACGGACGGCCACATTCTCTTCGACATGGAGGAGTTTC
TGGGCGCCACGCAAACGCCT
FMO03461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4789-RA | 942 | CG4789-RA | 31..513 | 38..520 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16801068..16801505 | 83..520 | 2190 | 100 | Plus |
| X | 23542271 | X | 16800960..16801007 | 38..85 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:28 has no hits.
FMO03461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:13 Download gff for
FMO03461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4789-RA | 42..536 | 24..520 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:48 Download gff for
FMO03461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4789-RA | 1..489 | 31..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:03 Download gff for
FMO03461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4789-RA | 19..513 | 24..520 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:03 Download gff for
FMO03461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16800950..16801005 | 29..83 | 91 | -> | Plus |
| X | 16801069..16801505 | 84..520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:13 Download gff for
FMO03461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16694983..16695038 | 29..83 | 91 | -> | Plus |
| arm_X | 16695102..16695538 | 84..520 | 100 | | Plus |
