FMO03467.5prime Sequence
857 bp (857 high quality bases) assembled on 2008-07-21
> FMO03467.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGCTGCTCC
GTCTAAGCCTTTTAATTCTCCTAGCGGTGAAGCCCCCAAATCCCTGTGAA
TCAAAGCGCATAGTTGGCCCCTTTCCTGCGGGTCAATCTGGCAGGATAAA
GGGTGGCGAGGAGGCTGAGATCGGATTTGCTCCATACCAGGTGTCCCTGC
AACCCATAGTGGGCTCCCATAATTGCGGTGGTGCCATCCTAAACGAAAAC
TGGATCATAACTGCTGGACACTGCGTGGAAAATTTCATTCCCGCCCTGGT
CAATGTGATCACGGGCACCAATAAGTGGGCAGAGCCCGGAGCGATCTACT
ACACCGCCGAGATCCACAAACACTGTATGTACGACCAGCCTTACATGCAT
AACGACATCGCCCTGGTGAAGCTTACCGAGAACATCACCTTCAATGAGCT
GACACAGCCGATCGCTTTGCCAACTAGACCGGTTCAACTCGGCGAAGAGA
TCGTCCTCACGGGCTGGGGCTCCGATGTGGCCTACGGGAGTTCCATGGAG
GACCTGCACAAGCTGACCGTGGGCCTTGTTCCTCTGGATGAGTGCTATGA
GACCTTCAACCGAACCAGCAGCATGGGTGTGGGTCACATCTGCACCTTTT
CGCGCGAGGGTGAGGGCGCCTGTCACGGCGATTCCGGTGGTCCGCTGGTG
AGCAATGGCCAATTGGTGGGTGTGGTCAATTGGGGACGACCATGCGGTGT
CGGACTGCCCGATGTGCAGGCCAATGTGTACTACTACCTCGACTGGATTC
GCAGCAAGCTCAGTGGCAACAACAAATGCTACTACGCAAGCTTTCTAGAC
CATTCGT
FMO03467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31265-RA | 909 | CG31265-RA | 30..832 | 33..835 | 4000 | 99.9 | Plus |
| CG31269-RB | 937 | CG31269-RB | 599..717 | 628..746 | 235 | 79.8 | Plus |
| CG4053-RB | 925 | CG4053-RB | 634..755 | 632..753 | 205 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17128241..17129043 | 33..835 | 4000 | 99.9 | Plus |
| 3R | 32079331 | 3R | 17127724..17127842 | 628..746 | 235 | 79.8 | Plus |
| 3R | 32079331 | 3R | 17131444..17131565 | 753..632 | 205 | 77.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:23 has no hits.
FMO03467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:54 Download gff for
FMO03467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31265-RA | 30..838 | 33..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:35 Download gff for
FMO03467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31265-RA | 18..826 | 33..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:49 Download gff for
FMO03467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31265-RA | 30..838 | 33..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:49 Download gff for
FMO03467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17128238..17129049 | 30..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:54 Download gff for
FMO03467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12953960..12954771 | 30..844 | 99 | | Plus |
