FMO03468.5prime Sequence
1066 bp (721 high quality bases) assembled on 2008-07-21
> FMO03468.5prime
CGTATAGCATACCTTATACGAAGTTATCAATCCACATGGACCGAGAGCGC
GAAAGAGATGTCAGGGCCCTGGAGCCACGCGACTTATCCTCCACGGGCCG
CATTTACGCCAGAAGCGATATTAAAATCAGCTCCTCGCCAACCGTCTCGC
CAACGATCTCAAACTCCTCTTCGCCCACACCGACGCCACCCGCCAGTTCC
TCAGTGACGCCGCTGGGCTTGCCCGGAGCGGTGGCAGCTGCTGCCGCCGC
CGTCGGAGGAGCCTCATCGGCGGGGGCCAGTTCCTATTTGCACGGCAACC
ACAAGCCCATCACCGGGATTCCGTGTGTGGCCGCCGCCTCCCGCTATACG
GCGCCCGTTCACATCGACGTGGGCGGGACCATCTACACCAGCTCACTGGA
GACGCTCACCAAGTACCCGGAGTCGAAGCTGGCCAAGCTCTTCAATGGCC
AGATACCCATCGTGCTGGACTCGCTGAAGCAGCACTATTTCATCGATCGC
GACGGGGGCATGTTCCGCCACATTCTGAACTTTATGAGAAACTCAAGACT
TCTGATTGCCGAGGATTTTCCCGACCTGGAGCTGCTGCTGGAGGAGGCTC
GCTACTACGAAGTGGAGCCGATGATTAAGCAGCTGGAAAAGCATGCGCAA
GGATCGCGTTCGCAATGGCAACTATTTGGTGGCGCCACCCACTCCACCGG
CTCGCCACATCGAGACGAGCCCGAGGACCATCGCATCGCCGGAGTGCAAT
TACGAGGTAGTGGCGCTGCACATCTCGCCAGATCTTGGCGAACGCATAAT
GCTGTCGGCAGAACGGGCTCTGCTCGACGAGCTCTTCCCGGAGGCCAGCC
GAGCGACCCGTCGAGTCGCAGCGGAGTGTCCTGCAACCAGGGCGACTGGG
GCAAATCATTCGCTTCCCCTCAACGGCTACTGAAGACTGAACTCGGTGCA
GTACTCACCGACTCCTCACGCCGGCTTCACCATCGAAGGCCAGCGTTGGG
GCCAGCAGTCTCCGAGATCTGCTGACCGACGCTTCAATGTAAGGCTTTCT
AATCATTCGATTGGAC
FMO03468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10440-RB | 2451 | CG10440-RB | 523..1527 | 36..1032 | 4555 | 97.7 | Plus |
| CG10440-RA | 2350 | CG10440-RA | 422..1426 | 36..1032 | 4555 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21561794..21562284 | 618..128 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 21561205..21561591 | 1001..619 | 1395 | 95.4 | Minus |
| 2R | 25286936 | 2R | 21562544..21562638 | 130..36 | 460 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-28 22:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 3215..3269 | 653..710 | 111 | 70.7 | Plus |
FMO03468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:21 Download gff for
FMO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10440-RA | 414..1430 | 29..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:25 Download gff for
FMO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10440-RA | 412..1428 | 29..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:46 Download gff for
FMO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10440-RA | 414..1430 | 29..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:46 Download gff for
FMO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21561794..21562281 | 131..618 | 100 | <- | Minus |
| 2R | 21562544..21562646 | 29..130 | 96 | | Minus |
| 2R | 21561166..21561591 | 619..1035 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:21 Download gff for
FMO03468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17450049..17450151 | 29..130 | 96 | | Minus |
| arm_2R | 17448671..17449096 | 619..1035 | 94 | <- | Minus |
| arm_2R | 17449299..17449786 | 131..618 | 100 | <- | Minus |
