FMO03469.5prime Sequence
1106 bp (965 high quality bases) assembled on 2008-07-21
> FMO03469.5prime
ACTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAAAATCGA
GTGGGCTCCCAAAGGAGTTCCCATGGAACGGCGTCGCCAGACGTTTGCCA
TGGCCTTCCTAATCCTATCCTTTATGATACTCTCCTTTGGATCCTATTTC
TTCGTTGCTGCCGTGCTGTTCTATGGAAGCCTTTTGTGGCGCACCATTAT
GGTCATCTATTTGGTCTACGTCTACGCGAATCACAAGAGAACCCACTCCA
TTATGGATGGCAATGGCTGGAAAATTAACCGCAACAATTGGCTGTTTCGG
CATTATCGGGACTACTTTCCCGTACAGCTGGTCAAGACCGCAGAGCTGCC
GCCGAATAAGAACTACATTTTGGCCAGTTTTCCGCACGGAATTTTGGGGA
CTGGCATTTCCATTAATATGGGTCTAGACATCTCCAAGTGGCTGCAACTG
TTCCCACAGGTGAGGCCCAAGGTGGCCACTTTGGATCAAAACTTCCTGAC
GCCCATCGTGCGTGGTCTCCTGAGATCTTGGGGCCTGGTGTCGGTTTCCA
AGGAGGCCTTAGTATATCTGCTGACCAAATCAAACGATCCCAAGCACAAG
GACAATCGTGATGGGTTCACCTCCAACGCGGTGGCTATTCTGGTGGGTGG
TGCCCAGGAGGCACTAAACTCGCACCCTGGCAAATATATATTGACACTGA
AGAACCGCAAGGGATTCGTTAAAATGGCCATTAGGACAGGGTCTTCGATT
GTTCCCACGTTTTCCTTTGGCGAGGTGGACATTCTGGATCAGGTTGCCAA
TCCACCGAACTCTCGGGTTCGTCGCTTTCAAGACTTTGTAAAGAGGATAC
GGGGATATCTCCGCTGATTCCCGTGGCCGGGCATCTTCAACTACTCCTTT
GGCTTTCTGCCCACCGTCTACGCATTTGTCCAGTTGTTGGCGCTCCCATC
GACTGGTTCAGAGCGATCACCAGACGCAGCCTTTGTGGATAAGATACACA
ACCGGTTATTTGACGACCTGAAAAGATGTCGCAAGTACAAGGATCAGTAC
TACCGAATTCCAGCAGGAAAACTGAATTTATCCGCTACTTTCTTAGACCT
TCATTG
FMO03469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1941-RD | 1203 | CG1941-RD | 63..1103 | 39..1068 | 4735 | 97.9 | Plus |
| CG1941-RC | 1678 | CG1941-RC | 538..1578 | 39..1068 | 4735 | 97.9 | Plus |
| CG1941-RB | 1390 | CG1941-RB | 250..1290 | 39..1068 | 4735 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7711074..7711418 | 398..742 | 1695 | 99.4 | Plus |
| 2R | 25286936 | 2R | 7711476..7711666 | 740..926 | 745 | 96.3 | Plus |
| 2R | 25286936 | 2R | 7710848..7710981 | 266..399 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 7710515..7710644 | 39..168 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 7710695..7710793 | 168..266 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7713309..7713648 | 403..742 | 425 | 75 | Plus |
| 2R | 25286936 | 2R | 7715880..7716208 | 400..728 | 280 | 72.3 | Plus |
| 2R | 25286936 | 2R | 7713708..7713871 | 745..905 | 255 | 79.9 | Plus |
| 2R | 25286936 | 2R | 7711742..7711861 | 936..1050 | 250 | 88.3 | Plus |
| 2R | 25286936 | 2R | 7713137..7713239 | 297..399 | 230 | 81.6 | Plus |
| 2R | 25286936 | 2R | 7716283..7716350 | 745..812 | 190 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:38 has no hits.
FMO03469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:32 Download gff for
FMO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1941-RB | 242..1298 | 31..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:21 Download gff for
FMO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1941-RA | 113..1169 | 31..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:30 Download gff for
FMO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1941-RB | 242..1298 | 31..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:30 Download gff for
FMO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7711075..7711416 | 399..740 | 99 | -> | Plus |
| 2R | 7711477..7711676 | 741..936 | 96 | -> | Plus |
| 2R | 7710504..7710644 | 27..168 | 94 | -> | Plus |
| 2R | 7710696..7710793 | 169..266 | 100 | -> | Plus |
| 2R | 7710849..7710980 | 267..398 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:32 Download gff for
FMO03469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3598009..3598149 | 27..168 | 94 | -> | Plus |
| arm_2R | 3598201..3598298 | 169..266 | 100 | -> | Plus |
| arm_2R | 3598354..3598485 | 267..398 | 100 | -> | Plus |
| arm_2R | 3598580..3598921 | 399..740 | 99 | -> | Plus |
| arm_2R | 3598982..3599181 | 741..936 | 96 | -> | Plus |
