FMO03470.5prime Sequence
676 bp (676 high quality bases) assembled on 2008-07-21
> FMO03470.5prime
GTATAGCATACATTATACGAAGTTATCAATCGACATGGCAGCAAAGATTG
TTATCGCTTTGGCTCTGTTCGCCGTGGCCCATGGCGCCGTCCTTAGAACT
GCTGCTCCAGTGGCAGTGGCTTCTGCTCCGGTGCCAGTTTTGGCCAAGAC
CGTTGAGTTGGAGGAGGTTGATCCGCATCCTCAGTACACCTACAGCTACG
ACGTGCAGGACACGCTTTCCGGCGACAACAAGGGGCATGTGGAGGAGCGC
GATGGTGACATGGTCCGCGGCGAGTACTCCCTGATCGACACCGATGGCTT
TAAGCGCACCGTGACCTATACCGCCGATTCCATTAACGGATTCAACGCCG
TCGTCCGCCGTGAACCCCTTGCCGCTGTTGTGGCCGCCGAGCCGTTGCTG
AAGGTTGCTGCCCCATTGGTCAAGGCCGCTCCAGTCGCCCCCATCGCCCC
TGTCGCCTTGGCCGCACCAGCTCCCATTGTGCGCTCCGCTCCAGTGGCCG
TCGCTGCTCCTCTGATCAAGTCCGCTCCCCTAGCAGTTGCCGCTCCGTTC
GTCCGCTCCGCCCCTCTGGCGGTGGCTGCTCCCGCTCCCGTTCTGCGTAC
CGCTGCCTATGCCACGCCTCTGCGGTACACCGCCCCTGCGTACACCGTCA
CCCAATTGGCAAGCTTTCTAGACCAT
FMO03470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Ae-RA | 754 | CG1330-RA | 56..679 | 35..658 | 3075 | 99.5 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 235..434 | 170..369 | 460 | 82 | Plus |
| Ccp84Ab-RA | 834 | CG1252-RA | 266..426 | 209..369 | 370 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6690962..6691575 | 658..45 | 3025 | 99.5 | Minus |
| 3R | 32079331 | 3R | 6693027..6693226 | 170..369 | 460 | 82 | Plus |
| 3R | 32079331 | 3R | 6702376..6702536 | 369..209 | 370 | 82 | Minus |
| X | 23542271 | X | 5804968..5805153 | 170..355 | 360 | 79.6 | Plus |
| 3R | 32079331 | 3R | 6704409..6704569 | 209..369 | 355 | 81.4 | Plus |
| 3R | 32079331 | 3R | 6689775..6689960 | 355..170 | 300 | 77.4 | Minus |
| 3R | 32079331 | 3R | 6687097..6687296 | 170..369 | 295 | 76.5 | Plus |
| 2L | 23513712 | 2L | 11945216..11945318 | 196..298 | 185 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:24 has no hits.
FMO03470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:37 Download gff for
FMO03470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ae-RA | 48..682 | 27..662 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:43 Download gff for
FMO03470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ae-RA | 48..682 | 27..662 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:27 Download gff for
FMO03470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ae-RA | 48..682 | 27..662 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:27 Download gff for
FMO03470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6690958..6691577 | 41..662 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:37 Download gff for
FMO03470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2516680..2517299 | 41..662 | 98 | -> | Minus |
