FMO03471.5prime Sequence
880 bp (880 high quality bases) assembled on 2008-07-21
> FMO03471.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTGTCA
AGAAGCCCAGGCCAAAGAAGAAGCCAGTGACCAAGAAGGTGGCTCCCGCT
CCTCTGGCTGTCAAGAAGCCCGTGGTCAAGAAGGTTGTTAACCAGCTGTT
CGAGAAGCGTCCCAAGAACTTCGGAATCGGCCAGAATGTGCAGCCCAAGC
GCGATCTGTCCCGTTTCGTTCGCTGGCCCAAATACATCCGGGTGCAGCGT
CAAAAGGCTGTGCTCCAAAAGCGCCTGAAGGTCCCACCACCAATCCACCA
GTTCAGCCAGACTCTGGACAAGACCACCGCCGTGAAGCTGTTCAAGCTGC
TGGAGAAGTACCGCCCCGAGTCGCCGCTGGCCAAGAAGCTGCGCCTGAAG
AAGATCGCCGAGGCTAAGGCCAAGGGCAAGGATGTGGAGCCCAAGAAGAA
GCCCAGCTATGTGTCCGCCGGTACCAACACGGTGACCAAGCTGATCGAGC
AGAAGAAGGCCCAACTGGTGGTCATTGCCCACGATGTTGATCCTCTGGAG
CTGGTGCTCTTCCTGCCCGCCCTGTGCCGCAAGATGGGCGTGCCCTACTG
CATTGTGAAGGGTAAGGCTCGTCTGGGTCGCCTGGTGCGTCGCAAAGACC
TGCACCACCCTCGCCCTGACCACCGTCGATAACAACGACAAGGCCAACTT
CGGCAAGGTCCTGGAGGCTGTGAAGACCAACTTCAACGAGCGCCACGAGG
AGATCCGTCGCCACTGGGGCGGTGGTATCCTTGGCTCCAAGAGTCTGGCC
CGCATCTCTAAGCTGGAGCGCGCCAAGGCACGCGAGCTTGCCCAGATGCA
GGGTGCAAGCTTTTCTAGACCATTCGTTTG
FMO03471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL7A-RG | 971 | CG3314-RG | 46..858 | 41..854 | 4015 | 99.6 | Plus |
| RpL7A-RF | 1130 | CG3314-RF | 86..898 | 41..854 | 4015 | 99.6 | Plus |
| RpL7A-RE | 1011 | CG3314-RE | 86..898 | 41..854 | 4015 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6531835..6532206 | 550..179 | 1845 | 99.7 | Minus |
| X | 23542271 | X | 6531129..6531433 | 854..549 | 1465 | 99.3 | Minus |
| X | 23542271 | X | 6532297..6532423 | 180..54 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:32 has no hits.
FMO03471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:57 Download gff for
FMO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RD | 175..987 | 41..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:08 Download gff for
FMO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RC | 44..856 | 41..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:15 Download gff for
FMO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL7A-RE | 86..898 | 41..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:15 Download gff for
FMO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6531129..6531431 | 551..854 | 99 | <- | Minus |
| X | 6531835..6532205 | 180..550 | 99 | <- | Minus |
| X | 6532298..6532421 | 56..179 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:57 Download gff for
FMO03471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6425162..6425464 | 551..854 | 99 | <- | Minus |
| arm_X | 6425868..6426238 | 180..550 | 99 | <- | Minus |
| arm_X | 6426331..6426454 | 56..179 | 100 | <- | Minus |
