FMO03473.5prime Sequence
639 bp (639 high quality bases) assembled on 2008-07-21
> FMO03473.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGAACGTACA
GCTGGAAAATGGCTTGGAAAGGAGGACCACCAGCCAGAGTTCCACTTCAT
CAGCGAATCCGGCAAATCTTGCGAGTCCCACCGAGGAATGCGGTTGTGTG
CGACTGGGCAAATGCAAATGGTTCAACGTGGCCAAGGGATGGGGCTTCCT
TACACCCAACGACGGCGGCCAGGAGGTGTTCGTCCATCAGAGCGTCATCC
AGATGTCAGGTTTCCGATCACTGGGCGAGCAGGAGGAGGTGGAATTCGAG
TGCCAGCGCACGTCGCGCGGATTGGAGGCCACCAGGGTGTCCAGCAGGCA
TGGCGGTAGCTGCCAAGGCAGCACCTACAGGCCGCGAATAAATCGCCGGA
CTCGCCGCATGCGCTGCTACAACTGCGGCGAATTCGCCAATCACATTGCC
TCCGAATGCGCTTTGGGTCCTCAGCCGAAGCGCTGTCATCGCTGCCGTGG
AGAAGACCATCTCCATGCCGACTGCCCGCACAAGAATGTGACCCAAAGCC
ACAGTAATAGCAAAAGCATAAGCAACAATAGCAGCAGCAGTGCAGCCCAA
GAGAAGAGCGAGGAGGCCACCGCAAGCTTTCTAGACCAT
FMO03473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lin-28-RA | 1152 | CG17334-RA | 299..884 | 36..621 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5656603..5656753 | 239..389 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 5656823..5656973 | 390..540 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 5656316..5656455 | 101..240 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 5657035..5657116 | 540..621 | 410 | 100 | Plus |
| 3L | 28110227 | 3L | 5654979..5655046 | 36..103 | 340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6856 | 530..590 | 124 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2393 | 547..625 | 118 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1100 | 555..596 | 113 | 76.7 | Plus |
FMO03473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:59 Download gff for
FMO03473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 293..884 | 30..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:55 Download gff for
FMO03473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 291..882 | 30..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:56 Download gff for
FMO03473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lin-28-RA | 293..884 | 30..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:56 Download gff for
FMO03473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5657036..5657116 | 541..621 | 100 | | Plus |
| 3L | 5656319..5656455 | 104..240 | 100 | -> | Plus |
| 3L | 5656605..5656753 | 241..389 | 100 | -> | Plus |
| 3L | 5656823..5656973 | 390..540 | 100 | -> | Plus |
| 3L | 5654972..5655046 | 22..103 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:59 Download gff for
FMO03473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5649419..5649555 | 104..240 | 100 | -> | Plus |
| arm_3L | 5648072..5648146 | 22..103 | 91 | -> | Plus |
| arm_3L | 5649705..5649853 | 241..389 | 100 | -> | Plus |
| arm_3L | 5649923..5650073 | 390..540 | 100 | -> | Plus |
| arm_3L | 5650136..5650216 | 541..621 | 100 | | Plus |
