FMO03474.5prime Sequence
907 bp (906 high quality bases) assembled on 2008-07-21
> FMO03474.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAACATGAACA
TGAACGACAGTCGACGCAACACCGCCACGGAATTCAGCTATATCCTGCAG
CGCCAGGGCAGCGATGTGTCGGTTGCCGAGGCTTATGCATTCGATGACTT
CAACAATATAATGAAGAACAACCATCAGACACATCAGCAACAGGGCCAGC
CGCAACAGCCACATCAGCAGCAGCAGCAGCCGCCGCAGCAGCAGCAGCAG
CAACAGCATCGCCAGCATTCGCAGCAGCAGCAGCAAGCACAGCAGGATGC
CGGACTGGGGGACACGCTGTCCTCGCTGCCACAGGCCTCGTTCAACTACA
TCAACTCCATCGTGGGCAGCGGCGTCATCGGCATACCCTACGCCCTTCAC
AGGGCCGGATTCGGGCTGGGCCTGGCCCTGCTCATCCTGGTGGCCTACAT
CACCGACTACTCACTCATCCTGATGGTCAGATGCGGCCACATCTGCGGTC
GGTTCAGCTATCCGGGCATCATGGAGGCAGCCTACGGCAAGTACGGCTAT
TACCTGCTCTCCCTGCTGCAGTTCATGTATCCATTCCTGGCCATGATTTC
CTACAACGTGGTGGTGGGCGATACGCTGTCGAAGGTTCTGGTCCGCTTCT
TCCCCTCCTGGGGCGGTTCCATGGGCGCCGTCCGACTGGGCGTGGTCTTC
TTCGTCAACGTGGGCGTGGTGATGCCCCTCTGTCTCTACAAGAACGTCTC
CTGACTGGCCAGAGCCAGCTTCATTAGCCTGGCGTGCGTGGTCTTCATCC
TGTTTGCCGTCATCATCAAGCTCATGTCGGGCGATTATAAGGTGACGGAC
ACGGCGGAATTCGTGGCGGGTTTCGCCATCTCGGATCTAATCCCGGCCAC
GGGGCAT
FMO03474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13743-RA | 3523 | CG13743-RA | 279..1143 | 36..903 | 4215 | 99.2 | Plus |
| CG13743-RB | 3463 | CG13743-RB | 348..1083 | 165..903 | 3570 | 99.1 | Plus |
| CG13743-RC | 3195 | CG13743-RC | 313..992 | 165..844 | 3355 | 99.6 | Plus |
| CG13743-RB | 3463 | CG13743-RB | 279..349 | 36..106 | 355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9050841..9051153 | 477..165 | 1550 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9049879..9050133 | 844..590 | 1260 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9050515..9050630 | 590..475 | 565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 9059254..9059325 | 107..36 | 360 | 100 | Minus |
| 2R | 25286936 | 2R | 9056573..9056636 | 166..103 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:55 has no hits.
FMO03474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:40 Download gff for
FMO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13743-RA | 275..1146 | 31..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:00 Download gff for
FMO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13743-RA | 274..1145 | 31..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:39 Download gff for
FMO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13743-RA | 275..1146 | 31..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:39 Download gff for
FMO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9049880..9050132 | 591..843 | 99 | <- | Minus |
| 2R | 9050515..9050629 | 476..590 | 99 | <- | Minus |
| 2R | 9050843..9051151 | 167..475 | 99 | <- | Minus |
| 2R | 9056573..9056632 | 107..166 | 100 | <- | Minus |
| 2R | 9048478..9048537 | 844..907 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:40 Download gff for
FMO03474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4935983..4936042 | 844..907 | 92 | <- | Minus |
| arm_2R | 4937385..4937637 | 591..843 | 99 | <- | Minus |
| arm_2R | 4938020..4938134 | 476..590 | 99 | <- | Minus |
| arm_2R | 4938348..4938656 | 167..475 | 99 | <- | Minus |
| arm_2R | 4944078..4944137 | 107..166 | 100 | <- | Minus |
