FMO03477.5prime Sequence
812 bp (812 high quality bases) assembled on 2008-07-21
> FMO03477.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTCGTACTACG
CGGAGCGAGCCCTGTCCCTACTCTACCCGCTGGCCATCGTTTCATCGCTG
GTCTGCTGCATCACCTCGGCGGTGGCCTGGACACACTGGCAGTACGTGCT
CAATGCCTGCCCGGACACCAATTGCGGCTGCGTGCTGCACGGCAAGAGCA
CGTTCCACAGCTTCGAGGGCGGCAACGTCGCCTACTGCCACTTCGCCACC
TACGGCCTGCTGCTGCCGCTGCTCTTCGCCGTCGTCCTGGGCGTCTACCA
CGGCTACCGCATGTGCATCGGTCGGGGCAAGCCCAAGGCGGGCACGGCCA
CCATCCGTCAGCGCTCCGGTGACATGATCGTGGTGACCACCGAGTCGGAA
CTCACGCCCGATGGTCTCTCGCCCTACTACTGGCTGCCCGCCACCGTCAT
CTCGACAATAATGGCCGTCTACCAACTGGTCTACTCGGCCGTGTTCACGG
ATGGCTTCGAGGTGACTTGCAAGCAGTACAGGGAGTCGCTGCTGAAGGAG
ATCCAGGGCGTGGGCAACATTGTGCCCGTGATCAAGTCGCGGCTCTCGTG
CGCCGCCGTCTTCGACTTCATGGACTATCTGGTGGAGAGCGTGTCGTACG
AGCGGCGACGCTACGGGCGCATCAATACGGCCGCCTGCCTGTACTTCACC
CTGGTCTTTGCCTGGATCGCACTGCTCGCATGGCTGCTCGTCTGCGTGAT
CAATGTCGTCCAGCTGCGGCGCACGAAGGCCGCCAGGGTCGCAAGCTTTC
TAGACCATTCGT
FMO03477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2310-RB | 1279 | CG2310-RB | 300..1052 | 38..790 | 3765 | 100 | Plus |
| CG2310-RA | 1083 | CG2310-RA | 104..856 | 38..790 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29491751..29492109 | 790..432 | 1795 | 100 | Minus |
| 3R | 32079331 | 3R | 29492396..29492721 | 363..38 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 29492170..29492239 | 432..363 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:14 has no hits.
FMO03477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:09 Download gff for
FMO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2310-RA | 88..856 | 24..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:14:49 Download gff for
FMO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2310-RB | 262..1030 | 24..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:27 Download gff for
FMO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2310-RA | 88..856 | 24..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:27 Download gff for
FMO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29491751..29492109 | 432..790 | 100 | <- | Minus |
| 3R | 29492171..29492238 | 364..431 | 100 | <- | Minus |
| 3R | 29492396..29492737 | 24..363 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:09 Download gff for
FMO03477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25317473..25317831 | 432..790 | 100 | <- | Minus |
| arm_3R | 25317893..25317960 | 364..431 | 100 | <- | Minus |
| arm_3R | 25318118..25318459 | 24..363 | 98 | | Minus |
