Clone FMO03478 Report

Search the DGRC for FMO03478

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:34
Well:78
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31810-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03478.5prime Sequence

1028 bp (1016 high quality bases) assembled on 2008-07-21

> FMO03478.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCTTATTTTG
CAAGTGATTTCTACAGGAATCTACATAGTGGGTTCTCTTAGCATCGTCGC
TTATCTCTACGAAAACTTAAAGTCCTTGTTCAGCATTATCAAGTCTGTTG
TGGAACCGTTCTTCAGGCCGAATTTGCCAAAGACTTTGGCGGAGAAATTC
GGAAATTGGGCAGTGGTGACCGGTGCGACCGATGGAATCGGAAAGGAATA
TGCCAGGGAGTTGGCTCGTCAGGGTCTTAACCTGGTGCTCGTTTCGCGGA
AAGAGGAAAAGCTGATTGCAGTCACCAACGAGATTGGGAGCCAATATAAT
GTGAAAATCAAGTGGATTGTTGCGGACTTTGCAAAGGGACGCGAGGTGTA
CGCTCATATCGAAAAGGAACTGAATGGAATCGAAGTTGGAATTTTGGTCA
ACAATGTGGGCACGATTCACGACCCGGAAAGCCTTGACAAGGTATCGGAG
GACATGTTGTGGGACCTTCTCACCGTCAACGTGGGATCGGTTACCATGCT
CACCCGCAAGATCCTGCCCCAGATGATTAGTCGTCGAAAGGGAGCAATTG
TTAACCTCGGATCCTCCTCCGAACTCCAGCCCCATCCCAATTTGACTGCT
TATGCGGCTACCAAGAAGTTCGTTACCCATTTTACTAAAGGTTTAGAATA
TGAGGTGGCCGAACACAATATCCATGTGCAGTTGGTTATGCCAGCCTTTG
TGGCCACCAATATGAATTCCTATTCCGATAAAGTGAGGCAAGGAGGACTG
CTTTTCCCCAACGCTTATTCCTATGCCCGGTCCGCAGTCTTTACACTGGG
AAAGACGAGCGAGACCAACGGTTTCTGGGTTCATGGAATTACAGTACGCC
TTCATGAGGTTGGCTCCCATGGATATTCGTACTTACTTCGGATACCAACT
CTTTAAACGATGAGAATCGAGGCCATGGAAGCACAGACTGAAAAACCAAT
AACTTTCTGCAAGCTTTTCTTGACCAGT

FMO03478.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31810-RA 1138 CG31810-RA 35..1008 34..1008 4775 99.5 Plus
CG31809-RC 1186 CG31809-RC 119..1057 69..1008 4450 98.4 Plus
CG31809-RB 1338 CG31809-RB 271..1209 69..1008 4450 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16849401..16849841 887..447 2205 100 Minus
2L 23513712 2L 16853959..16854399 887..447 2205 100 Minus
2L 23513712 2L 16852155..16852334 213..34 900 100 Minus
2L 23513712 2L 16843528..16843896 878..510 810 81.3 Minus
2L 23513712 2L 16858300..16858444 213..69 680 97.9 Minus
2L 23513712 2L 16850149..16850282 345..212 640 98.5 Minus
2L 23513712 2L 16854707..16854840 345..212 640 98.5 Minus
2L 23513712 2L 16849984..16850095 447..336 560 100 Minus
2L 23513712 2L 16854542..16854653 447..336 560 100 Minus
2L 23513712 2L 16849148..16849269 1008..887 485 96.7 Minus
2L 23513712 2L 16853749..16853870 1008..887 380 91.1 Minus
2L 23513712 2L 16844678..16844803 337..212 300 82.5 Minus
2L 23513712 2L 16844509..16844618 447..338 250 81.8 Minus
Blast to na_te.dros performed on 2014-11-28 22:55:22 has no hits.

FMO03478.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:11 Download gff for FMO03478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 29..1014 29..1016 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:39 Download gff for FMO03478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 27..1012 29..1016 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:16 Download gff for FMO03478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31810-RA 29..1014 29..1016 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:16 Download gff for FMO03478.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16849142..16849263 893..1016 93 <- Minus
2L 16849395..16849840 448..892 99 <- Minus
2L 16849984..16850094 337..447 100 <- Minus
2L 16850158..16850280 214..336 100 <- Minus
2L 16852155..16852340 29..213 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:11 Download gff for FMO03478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16849142..16849263 893..1016 93 <- Minus
arm_2L 16849395..16849840 448..892 99 <- Minus
arm_2L 16849984..16850094 337..447 100 <- Minus
arm_2L 16850158..16850280 214..336 100 <- Minus
arm_2L 16852155..16852340 29..213 98   Minus