FMO03478.5prime Sequence
1028 bp (1016 high quality bases) assembled on 2008-07-21
> FMO03478.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCTTATTTTG
CAAGTGATTTCTACAGGAATCTACATAGTGGGTTCTCTTAGCATCGTCGC
TTATCTCTACGAAAACTTAAAGTCCTTGTTCAGCATTATCAAGTCTGTTG
TGGAACCGTTCTTCAGGCCGAATTTGCCAAAGACTTTGGCGGAGAAATTC
GGAAATTGGGCAGTGGTGACCGGTGCGACCGATGGAATCGGAAAGGAATA
TGCCAGGGAGTTGGCTCGTCAGGGTCTTAACCTGGTGCTCGTTTCGCGGA
AAGAGGAAAAGCTGATTGCAGTCACCAACGAGATTGGGAGCCAATATAAT
GTGAAAATCAAGTGGATTGTTGCGGACTTTGCAAAGGGACGCGAGGTGTA
CGCTCATATCGAAAAGGAACTGAATGGAATCGAAGTTGGAATTTTGGTCA
ACAATGTGGGCACGATTCACGACCCGGAAAGCCTTGACAAGGTATCGGAG
GACATGTTGTGGGACCTTCTCACCGTCAACGTGGGATCGGTTACCATGCT
CACCCGCAAGATCCTGCCCCAGATGATTAGTCGTCGAAAGGGAGCAATTG
TTAACCTCGGATCCTCCTCCGAACTCCAGCCCCATCCCAATTTGACTGCT
TATGCGGCTACCAAGAAGTTCGTTACCCATTTTACTAAAGGTTTAGAATA
TGAGGTGGCCGAACACAATATCCATGTGCAGTTGGTTATGCCAGCCTTTG
TGGCCACCAATATGAATTCCTATTCCGATAAAGTGAGGCAAGGAGGACTG
CTTTTCCCCAACGCTTATTCCTATGCCCGGTCCGCAGTCTTTACACTGGG
AAAGACGAGCGAGACCAACGGTTTCTGGGTTCATGGAATTACAGTACGCC
TTCATGAGGTTGGCTCCCATGGATATTCGTACTTACTTCGGATACCAACT
CTTTAAACGATGAGAATCGAGGCCATGGAAGCACAGACTGAAAAACCAAT
AACTTTCTGCAAGCTTTTCTTGACCAGT
FMO03478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31810-RA | 1138 | CG31810-RA | 35..1008 | 34..1008 | 4775 | 99.5 | Plus |
CG31809-RC | 1186 | CG31809-RC | 119..1057 | 69..1008 | 4450 | 98.4 | Plus |
CG31809-RB | 1338 | CG31809-RB | 271..1209 | 69..1008 | 4450 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16849401..16849841 | 887..447 | 2205 | 100 | Minus |
2L | 23513712 | 2L | 16853959..16854399 | 887..447 | 2205 | 100 | Minus |
2L | 23513712 | 2L | 16852155..16852334 | 213..34 | 900 | 100 | Minus |
2L | 23513712 | 2L | 16843528..16843896 | 878..510 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16858300..16858444 | 213..69 | 680 | 97.9 | Minus |
2L | 23513712 | 2L | 16850149..16850282 | 345..212 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16854707..16854840 | 345..212 | 640 | 98.5 | Minus |
2L | 23513712 | 2L | 16849984..16850095 | 447..336 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16854542..16854653 | 447..336 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16849148..16849269 | 1008..887 | 485 | 96.7 | Minus |
2L | 23513712 | 2L | 16853749..16853870 | 1008..887 | 380 | 91.1 | Minus |
2L | 23513712 | 2L | 16844678..16844803 | 337..212 | 300 | 82.5 | Minus |
2L | 23513712 | 2L | 16844509..16844618 | 447..338 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:22 has no hits.
FMO03478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:11 Download gff for
FMO03478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..1014 | 29..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:39 Download gff for
FMO03478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 27..1012 | 29..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:16 Download gff for
FMO03478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31810-RA | 29..1014 | 29..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:16 Download gff for
FMO03478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16849142..16849263 | 893..1016 | 93 | <- | Minus |
2L | 16849395..16849840 | 448..892 | 99 | <- | Minus |
2L | 16849984..16850094 | 337..447 | 100 | <- | Minus |
2L | 16850158..16850280 | 214..336 | 100 | <- | Minus |
2L | 16852155..16852340 | 29..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:11 Download gff for
FMO03478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16849142..16849263 | 893..1016 | 93 | <- | Minus |
arm_2L | 16849395..16849840 | 448..892 | 99 | <- | Minus |
arm_2L | 16849984..16850094 | 337..447 | 100 | <- | Minus |
arm_2L | 16850158..16850280 | 214..336 | 100 | <- | Minus |
arm_2L | 16852155..16852340 | 29..213 | 98 | | Minus |