FMO03482.5prime Sequence
521 bp (521 high quality bases) assembled on 2008-07-21
> FMO03482.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCTGATGTT
CCAAAGCGTGAAGTTGAAAATGTCGAATTCGTTTTCGAAGTCATGGGCTC
CCCCGGTGAGGGCATTGATGCCGTCGACCTAGGTGATGCCCTCCGCGCTC
TGAACTTGAACCCCACATTGGCGCTGATCGAGAAATTGGGCGGCACCAAG
AAGCGCAACGAGAAGAAGATCAAGCTGGATGAGTTCCTGCCCATCTACTC
ACAGGTCAAGAAGGAGAAGGAGCAGGGCTGCTACGAGGACTTCATTGAGT
GCTTGAAGCTCTACGACAAGGAGGAGAACGGCACCATGCTGCTGGCTGAG
CTGCAGCACGCCCTGCTGGCGCTTGGTGAGAGCTTGGATGACGAGCAGGT
GGAGACCCTGTTCGCTGACTGCATGGATCCCGAGGATGATGAAGGATTTA
TCCCCTACTCTCAGTTCGTCCAGCGCCTGATGAGCGATCCTGTCGTCTTC
GACGCAAGCTTTCTAGACCAT
FMO03482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mlc1-RD | 1414 | CG5596-RD | 66..530 | 39..503 | 2310 | 99.8 | Plus |
| Mlc1-RB | 929 | CG5596-RB | 66..530 | 39..503 | 2310 | 99.8 | Plus |
| Mlc1-RA | 882 | CG5596-RA | 66..489 | 39..462 | 2105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27658611..27658921 | 380..70 | 1540 | 99.7 | Minus |
| 3R | 32079331 | 3R | 27658469..27658556 | 462..375 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 27658073..27658113 | 503..463 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:37 has no hits.
FMO03482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:59 Download gff for
FMO03482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 58..533 | 31..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:47 Download gff for
FMO03482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 80..555 | 31..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:03 Download gff for
FMO03482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mlc1-RB | 58..533 | 31..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:03 Download gff for
FMO03482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27658069..27658113 | 463..507 | 95 | <- | Minus |
| 3R | 27658469..27658555 | 376..462 | 100 | <- | Minus |
| 3R | 27658616..27658921 | 70..375 | 99 | <- | Minus |
| 3R | 27659929..27659967 | 30..69 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:59 Download gff for
FMO03482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23483791..23483835 | 463..507 | 95 | <- | Minus |
| arm_3R | 23484191..23484277 | 376..462 | 100 | <- | Minus |
| arm_3R | 23484338..23484643 | 70..375 | 99 | <- | Minus |
| arm_3R | 23485651..23485689 | 30..69 | 92 | | Minus |
