Clone FMO03483 Report

Search the DGRC for FMO03483

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:34
Well:83
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9757-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03483.5prime Sequence

436 bp (436 high quality bases) assembled on 2008-07-21

> FMO03483.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCACATTTG
TTTGCCTTGCCCTGGCGACCATTCTCCTGGTCGCCGGCTCATCAGCAGCC
ACATATGATCCTGTGGCGGCGCAACTTCTGGATGTGGATGCAGGTGTCCA
GGCTCCGGTGGCAGCACGCCAAGCACGTCAGTTTGGCGGCGGCTTTGGCG
GTCCGGGAGGCGGTTTCGGAGGTCCAGGCGGCGGATTCGGAGGTCAAGGC
GGCGGATTCGGAGGTCCAGGCGGTGGATTCGGAGGTCAAGGCGGCGGATT
CAGAGGTCAAGGCGGCTTCGGAGGCGGTGGCTTTGGTGGACGTCCAGGTG
GCGGCTTTGGCGGACCGGGAGGCGGCTTCGGAGGACCAGGCGGTGGCTTC
GGTGGCGGATTTGGAGGCGCAAGCTTTCTAGACCAT

FMO03483.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9757-RB 851 CG9757-RB 57..437 38..418 1875 99.5 Plus
CG9757-RA 568 CG9757-RA 57..437 38..418 1875 99.5 Plus
CG9757-RB 851 CG9757-RB 246..334 185..273 310 89.9 Plus
CG9757-RA 568 CG9757-RA 246..334 185..273 310 89.9 Plus
CG9757-RB 851 CG9757-RB 204..292 227..315 295 88.8 Plus
CG9757-RA 568 CG9757-RA 204..292 227..315 295 88.8 Plus
CG9757-RB 851 CG9757-RB 267..335 185..253 225 88.4 Plus
CG9757-RA 568 CG9757-RA 267..335 185..253 225 88.4 Plus
CG9757-RB 851 CG9757-RB 204..272 248..316 210 87 Plus
CG9757-RA 568 CG9757-RA 204..272 248..316 210 87 Plus
CG9757-RB 851 CG9757-RB 369..421 188..240 205 92.5 Plus
CG9757-RA 568 CG9757-RA 369..421 188..240 205 92.5 Plus
CG9757-RB 851 CG9757-RB 207..259 350..402 190 90.6 Plus
CG9757-RA 568 CG9757-RA 207..259 350..402 190 90.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13611997..13612377 418..38 1875 99.5 Minus
3R 32079331 3R 13612100..13612188 273..185 310 89.9 Minus
3R 32079331 3R 13612142..13612230 315..227 295 88.8 Minus
3R 32079331 3R 13612099..13612167 253..185 225 88.4 Minus
3R 32079331 3R 13612162..13612230 316..248 210 87 Minus
3R 32079331 3R 13612013..13612065 240..188 205 92.5 Minus
3R 32079331 3R 13612175..13612227 402..350 190 90.6 Minus
Blast to na_te.dros performed on 2014-11-28 22:37:44 has no hits.

FMO03483.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:39 Download gff for FMO03483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 29..418 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:14:47 Download gff for FMO03483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 44..433 29..418 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:51 Download gff for FMO03483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9757-RA 48..437 29..418 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:51 Download gff for FMO03483.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13611997..13612386 29..418 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:39 Download gff for FMO03483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9437719..9438108 29..418 98   Minus