FMO03484.5prime Sequence
998 bp (919 high quality bases) assembled on 2008-07-21
> FMO03484.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCGTCTGCT
ACGTCTTGGAGGTGCTATGCCACAGGCCGCCCCGCCCACAGATGCGCCCG
TCGTAGACACCGCCGAGCAGGTGTACATCTCGTCCTTGGCCCTGCTCAAG
ATGCTTAAGCACGGACGGGCCGGCGTGCCCATGGAGGTGATGGGTCTGAT
GTTGGGCGAATTCGTGGACGACTACACGGTGCAGGTCATCGATGTGTTCG
CCATGCCGCAAACGGGTACTGGAGTATCCGTAGAGGCCGTGGATCCCGTC
TTTCAGGCGAAGATGTTGGACATGCTGAAGCAGACGGGTCGACCCGAAAT
GGTCGTCGGCTGGTATCACTCGCATCCCGGTTTCGGCTGCTGGCTGTCCG
GCGTGGACATCAATACGCAGCAATCCTTCGAGGCGCTGTCGGAGCGAGCC
GTAGCCGTCGTCGTCGATCCCATTCAGTCTGTCAAGGGCAAAGTGGTCAT
CGATGCCTTCCGCCTGATCAATCCCAACATGCTTGTGCTGGGACAGGAGC
CCCGGCAGACAACCTCCAATTTGGGTCATCTGCAAAAGCCCTCCGTACAG
GCCCTGATCCACGGGCTCAATCGCCACTACTACTCGATTAGCATAAACTA
CCGCAAGAACGAACTGGAGCAGAAGATGCTTCTCAATCTGCACAAAAAGT
CGTGGAAAGGACGGCCTCACGTTGTCCGACTACAATGAGCACTGTTCCAT
CAACGAGGACACCGTGGCCGAGATGCTGGATCTCGCCAAGAACTACAACA
AGTAGCTGGAGGACGAGGAGAAAATGACGCCCGAGCAGCTGGCGATCAAG
AACGTGGGCAAGCAGGACCCCAGCGGCATTTGGAGAAGACGTGGACAGGT
TATGCAAAACAATATTGTGCATGCCTGGGGCGCATGCTGGACACATAGTC
TTTAGGCAAGCTTTCTAAACCATTCGTTGCGCGCGGGCCAGTATGGTC
FMO03484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn11-RA | 1208 | CG18174-RA | 171..1092 | 37..954 | 4345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5058786..5059550 | 802..37 | 3780 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5058520..5058673 | 954..806 | 430 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:24 has no hits.
FMO03484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:53 Download gff for
FMO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 165..1092 | 29..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:51 Download gff for
FMO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 191..1118 | 29..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:50 Download gff for
FMO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn11-RA | 165..1092 | 29..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:50 Download gff for
FMO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5058520..5058676 | 803..954 | 92 | <- | Minus |
| 2L | 5058786..5059556 | 29..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:53 Download gff for
FMO03484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5058520..5058676 | 803..954 | 92 | <- | Minus |
| arm_2L | 5058786..5059556 | 29..802 | 99 | | Minus |
