FMO03485.5prime Sequence
1248 bp (1078 high quality bases) assembled on 2008-07-21
> FMO03485.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCAGGA
CATGGGCATGGCAACGGGCTACTTTCAGGACGCAGACATGCAGATGGATG
AACCGGCGGCCGCCACGCAATCGATCTACCCGCATTCGGCGACATTATTC
GCGGCCATTAGTGCCTGTGTCTTTGTGACGATCGGCGTTCTTGGCAACCT
GATTACCCTGCTGGCGCTGCTCAAGAGCCCCACGATACGGGAGCATGCCA
CAACCGCCTTCGTCATTTCGCTAAGCATCTCCGACCTGCTCTTCTGCTCC
TTCAGCCTGCCACTGACCGCAGTGCGATTCTTCCAGGAGAGCTGGACTTT
TGGTACCACATTGTGCAAGATCTTTCCGGTGATCTTCTATGGCAATGTGG
CTGTTTCACTCCTCAGCATGGTGGGCATCACCCTGAACAGATATATACTC
ATCGCTTGCCACAGCCGCTACTCGCAGATATATAAGCCTAAGTTCATAAC
CCTGCAGCTGTTGTTCGTTTGGGCCGTCTCCTTTCTGCTGTTGCTGCCGC
CCATATTGGGCATCTGGGGCGAGATGGGCCTGGACGAGGCCACCTTCTCC
TGCACAATACTCAAGAAGGAGGGGCGATCGATCAAGAAGACGCTGTTCGT
GATCGGCTTCCTGCTGCCTTGCCTGGTGATCATCGTTTCGTACTCGTGCA
TCTACATTACGGTGCTGCACCAGAAAAAGAAGATTCGCAACCACGATAAC
TTCCAGATCGCAGCGGCCAAGGGCTCCTCGTCGTCCGGCGGCGGATCCTA
CATGACCACCACATGCACGCGCAAGGCGCGCGAAGACAATCGACTGACCG
TCATGATGGTCACCATCTTTCTGTGCTTCCTCGTCTGCTTCCTGCCGCTA
ATGCTGGCCAATGTGGTGGACGACGAGCGCAATACCTCGTACCCCTGACT
GCACATCATCGCCTCCGTGATGGCCTGGGCTTCCAGTGTCATTAACCCGA
TCATCTATGCGGCCAGCAATCGCAACTACAGAGTGACTACTACAAGAATC
TTTGCGCTGCTCAAGTTCTGGGGGCGAACGTTGTCGCCGATGCCGAATAA
AAAACTATCACAAAGCAAGAACTCAAGGAGCTGTCGGGCGTCATCCGCAG
CACGCCCGCTTATCAGCTGTGGCATGAAATAGAAATTAACGAATGTGACA
AACATATTCCGGTAGACAGCTTCTAGAACCATCCTTTTTACGCCCCGG
FMO03485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tre1-RB | 1499 | CG3171-RB | 185..1356 | 40..1209 | 5390 | 98 | Plus |
| Tre1-RA | 1634 | CG3171-RA | 320..1491 | 40..1209 | 5390 | 98 | Plus |
| Tre1-RC | 1655 | CG3171-RC | 320..1512 | 40..1209 | 5170 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5674222..5674710 | 1031..543 | 2430 | 99.8 | Minus |
| X | 23542271 | X | 5675329..5675483 | 194..40 | 775 | 100 | Minus |
| X | 23542271 | X | 5675112..5675258 | 339..193 | 735 | 100 | Minus |
| X | 23542271 | X | 5674771..5674876 | 543..438 | 530 | 100 | Minus |
| X | 23542271 | X | 5674940..5675042 | 440..338 | 515 | 100 | Minus |
| X | 23542271 | X | 5674027..5674146 | 1156..1037 | 320 | 91.8 | Minus |
Blast to na_te.dros performed 2014-11-28 22:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader3 | 5484 | invader3 INVADER3 5484bp | 19..69 | 903..853 | 129 | 72.5 | Minus |
| invader3 | 5484 | invader3 INVADER3 5484bp | 5205..5255 | 903..853 | 129 | 72.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2831 | 547..502 | 121 | 78.7 | Minus |
FMO03485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:46 Download gff for
FMO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tre1-RA | 318..1505 | 37..1221 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:27:53 Download gff for
FMO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tre1-RA | 316..1503 | 37..1221 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:44 Download gff for
FMO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tre1-RA | 318..1505 | 37..1221 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:44 Download gff for
FMO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5674222..5674709 | 544..1031 | 99 | <- | Minus |
| X | 5674771..5674873 | 441..543 | 100 | <- | Minus |
| X | 5674940..5675040 | 340..440 | 100 | <- | Minus |
| X | 5675112..5675257 | 194..339 | 100 | <- | Minus |
| X | 5675330..5675485 | 37..193 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:46 Download gff for
FMO03485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5568255..5568742 | 544..1031 | 99 | <- | Minus |
| arm_X | 5568804..5568906 | 441..543 | 100 | <- | Minus |
| arm_X | 5568973..5569073 | 340..440 | 100 | <- | Minus |
| arm_X | 5569145..5569290 | 194..339 | 100 | <- | Minus |
| arm_X | 5569363..5569518 | 37..193 | 99 | | Minus |
