FMO03486.5prime Sequence
1225 bp (1048 high quality bases) assembled on 2008-07-21
> FMO03486.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAATCTCAAT
GGAATCGTTGGATCTTGCTGGCTATTTTGGGACTAGCTCTGGGCCAGATT
TCACAGGCAGCCAAGATCCTGGTACTGTTTCCCCATGTCAACGAGGGTCA
CTTTGCGGTGATGCGGACTCTGGTCACCGAGTTGGCCAATCGCGAGCACA
CAATTGAAGTATATACCGGTCATGGTTTGGGAGAATCTCTGGATAACGTT
ACCGAAACGGTGACAGCGGAATTTCCTTTTTGGAGCGAATTGCAAAAACA
GGCGGCACCCAAGGGAAACCTTGCTGATCTTGGACTCCTGCCAATTGAAA
AACTCCGCCAGTCATTGGCCAGCGTTGGAGCGCGTGCTTTGGACCACTTC
CTCGCCCAAGAGCCCATCCAAAAGCTGCTGAAGATGTCATATCTTGAGTT
CGATTTCGATGTGATCCTTGTGGACTACTTCTACACAGAGGCTTTGTTGG
CACTGGGAGCTCTCCATCAGCGGCCAGTTGTAGGGATTATTTCCACGGAC
TTCGGCAACTACATGGATGCCGTACAAGAGGCACTGGTACCAGCCGCTTG
TTCACCCATCGATTTTGAGCGGGATCAACCTGAAATGAGCTTCTCCGTAC
GATTGGGAAATATTCGGACATGTATTGCTCGCCGTAAGCAGTTCATCAAG
GATCACTACGGCGGTCAGGAGCAGTTGGTGACCAAGTACTTCCAGCTGCA
GAGCTCTATCCCCGAGCTGCAGGCCAGCCAGCTATCCGTGCTGCTGCTCA
ATAGTCATGTGCCATTGATAACTCCCAAAGTTAGTATCCAACAGATAATT
CCCGCCGGTGGACTTCACATCCGTGGTCCCAAGGAGCTGCCCTGGAATGT
GAAGCGCTTTCTGGAGGAGCGCGTCCTGAGCCATCCTACGTTTCAACTGG
GCAATGAAGCAAGCTTGTGGCCAGCTACCCAAGGAGAAACTCGACACTTC
TGTTTGCCTTCTTCTCCGCCGAAAGCAAAGCATATCTGACCTGTCACGAC
GTCAAGACCCTGTAGCACTGCAAGAATGTGATGATCCAGCATGCCGTGCC
GCAAATGACTTCCTGCGCATCGAAGTCAGCTTCCTACCAATGAGAACTGC
CTCACCTGCGAGAGCATCATGCGAGGCCCCCATCTGGGAACTGTCCCCAA
TTACTCGACCAGTAGAACCTCTGCA
FMO03486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt58Fa-RB | 1864 | CG4414-RB | 111..1261 | 38..1173 | 5050 | 97.1 | Plus |
| Ugt58Fa-RA | 1742 | CG4414-RA | 111..1261 | 38..1173 | 5050 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22642470..22643286 | 1103..291 | 3470 | 97.4 | Minus |
| 2R | 25286936 | 2R | 22643492..22643654 | 202..40 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 22643343..22643430 | 290..203 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:09 has no hits.
FMO03486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:15 Download gff for
FMO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt58Fa-RA | 104..1200 | 31..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:27:58 Download gff for
FMO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt58Fa-RA | 102..1198 | 31..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:52 Download gff for
FMO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt58Fa-RA | 104..1200 | 31..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:52 Download gff for
FMO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22642466..22643286 | 291..1106 | 97 | <- | Minus |
| 2R | 22643343..22643430 | 203..290 | 100 | <- | Minus |
| 2R | 22643492..22643654 | 40..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:15 Download gff for
FMO03486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18529971..18530791 | 291..1106 | 97 | <- | Minus |
| arm_2R | 18530848..18530935 | 203..290 | 100 | <- | Minus |
| arm_2R | 18530997..18531159 | 40..202 | 100 | | Minus |
