FMO03487.5prime Sequence
974 bp (974 high quality bases) assembled on 2008-07-21
> FMO03487.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAAGAGCACCGC
CGCTTGTCTGATAGTCGCCCTTGCGGCGCTGTCCACCGCCCACTCGGCGC
CCACCGAAGGTCAGGTGGCGCCCCAGTCCGCCACGCAACTAGCCCTGGAC
ATGTACCATGGCTGCCTTAAGGACCTCAGTGTTTCCTGCGTGCGTCCCAA
GGCCCTGCAGTGGTTCAACTCTGCCCTCCGGCAGCCGGAGGTGCGCATCA
CCGAGCGCCTGTCGATTGTCCGTACCGCGGAGAAGGTCGAGTCCCGATCC
ATGAACCCGGAGGAGCGCCTCTTCGACGACATCGACAGCTATCTGGGCAG
CCACTCGCTGAGGATCCAGGCTCCGGAGTACTTCCGCACCTCGGAAGCCC
GCTCCCTGGTGCCCGACTTCCTCATGTCGAATCCGCTTACTCAGGGAGGA
TTAGTTCCCCTGGCAGCTGCTAACGAAGGACGTGGCATGATCCGCAAGGC
AGTTCTGCCCTTCCTTCTGGGCCTGAAACTGAAGACCACTGTGCTGGTGC
CACTGGCCTTGGGACTCATTGCCCTAAAGACCTGGAAGGCCATGACCTTG
GGCCTGCTCTCATTGGTGCTGTCTGGAGCCTTGGTTATTTTCAAGATTGC
CAAGCCCAAGATTGTCAACTACGAGGTGGTGCACTATCCCCATCACGTGG
ATCATGTGGTGCCGCATCACATTGAGCACGTGGTGCCCCACCACATCGAG
CACGTGGTGCCCCACCACATCGAGCACATAGTGCCGCATCACATCGATCA
TCATCTGGAGCACCACATCGATCACCACGTGGATCTGCCCGTGGGAGCAC
ATCGAGCACCTGGAGCACCCATCGCCCGCCTGGTGATCCTCATGCCTGGG
CCCGATCCTCGCAAGAGCCGCAAGATGCCCAGGACTTGGCCTACGCGGGT
CAAAATGCAAGCTTTCTAGACCAT
FMO03487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi18-RA | 1270 | CG1169-RA | 104..1017 | 37..952 | 4515 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6331083..6331556 | 477..952 | 2265 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6330351..6330793 | 37..479 | 2215 | 100 | Plus |
| 3R | 32079331 | 3R | 6331297..6331379 | 715..797 | 250 | 86.7 | Plus |
| 3R | 32079331 | 3R | 6331321..6331403 | 691..773 | 250 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:24 has no hits.
FMO03487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:06 Download gff for
FMO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi18-RA | 101..1025 | 30..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:18 Download gff for
FMO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi18-RA | 99..1023 | 30..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:27 Download gff for
FMO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi18-RA | 101..1025 | 30..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:27 Download gff for
FMO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6330331..6330792 | 14..478 | 97 | -> | Plus |
| 3R | 6331085..6331564 | 479..960 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:06 Download gff for
FMO03487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2156053..2156514 | 14..478 | 97 | -> | Plus |
| arm_3R | 2156807..2157286 | 479..960 | 98 | | Plus |
