Clone FMO03490 Report

Search the DGRC for FMO03490

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:34
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13618-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03490.5prime Sequence

809 bp (809 high quality bases) assembled on 2008-07-21

> FMO03490.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAAAATACTCG
CTACTACTAATGCTGCTGCTAATCGCTGCGGTTGCGCAGGAACTTACTGT
AACGGCTGCGCAAGAATTGCCCGAAGGCTTTCCCAAGTGCAAACGGGACG
CGAACTTCGACAAATGCCTGGTGGATGCCGTCAATGTGGCGATACAGCAG
CTGAAGGCGGGCAATAGGGAATTTGGCATCCCGCCCCTCGAACCGCTGAC
CGTAAAGAAACTCGTTATAGACGCCGGCAATGCGCCAATAAATCTGCGCC
AGGCCTTGAAGAATGTGAAGGTGCACGACATGATCTCCACCAGCAAGATC
CAGCGGTACAGAACCGATCTGGATAAGCACTTGATTATCTGTGATAGCCG
AACGGATCGCATAGAGATGATTGGCGACTACAAGATGTCCGGCCGCATCC
TTCTGCTGCCCATCACGGGACATGGAAAGGCCAATGTCACGCTGATCAAC
ACCAAGATCGAGCATCGCCTGATCGGCGAACCCTTTGAGAAGGATGGCGT
CAAGTACATGCGACTAAAGGACTACCGGGTGTCCTTCGATCCCGAGAGGG
TGTACATGAACTTCGAGAATCTATTCAACGACAAAACTCTGTCGGATGGT
ATGAATCGATTCCTTAACGAAAACTGGGAGACGGTGTTCAACGAACTAAA
GGTGGGATATGCCAAGAGTTTCGGCATCATCTTCAGGGAGCTGTCCAACA
AACTGTTCGAGAAAGTGCCCTTCGATAATATATTCTTAAGTGCAAGCTTT
CTAGACCAT

FMO03490.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13618-RA 1021 CG13618-RA 180..935 36..791 3750 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24527015..24527447 359..791 2135 99.5 Plus
3R 32079331 3R 24526750..24526901 210..361 760 100 Plus
3R 32079331 3R 24526599..24526689 121..211 455 100 Plus
3R 32079331 3R 24524973..24525057 36..120 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:30:06 has no hits.

FMO03490.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:38 Download gff for FMO03490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..943 36..802 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:16 Download gff for FMO03490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 174..937 36..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:22 Download gff for FMO03490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13618-RA 180..943 36..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:22 Download gff for FMO03490.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24527018..24527455 362..802 98   Plus
3R 24524968..24525057 33..120 96 -> Plus
3R 24526599..24526688 121..210 100 -> Plus
3R 24526751..24526901 211..361 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:38 Download gff for FMO03490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20350690..20350779 33..120 96 -> Plus
arm_3R 20352321..20352410 121..210 100 -> Plus
arm_3R 20352473..20352623 211..361 100 -> Plus
arm_3R 20352740..20353177 362..802 98   Plus