FMO03493.5prime Sequence
835 bp (835 high quality bases) assembled on 2008-07-21
> FMO03493.5prime
TAGCATACATTAAACGAAGTTATCAGTCGACATGGCACCCATCGAGAAAG
CTAAAAAGGTGGCCAAGTCGGCCAAAAAGGGCAAGAAGCACCCCGTCAAC
TCCTACCTGAAGGGCGGTATCCTGCGTTACTCCAAGGCCCAGATGTACAA
GCGTCGTGCTCTGTACCGCCTGAAGGACAAGAAGAGCCCCGTCGTGGAGA
AGGCCAAGGTGCCCATCAAGAAGGTGAAGAAGATCGGAGGACCCAAGAAC
GGCGGTGAGCGCACGGTCTTCCTGAAGAAGAGCAAGGCCTCCTACCCGAC
CAAGACGTTCGTGAAGAAGCGCCCCTCCAAGGCAAACTTCAGCGAGCACA
AACGCAACACGCGCCGCAACCTGACCCCCGGAACCGTGCTCATCCTGCTG
GCCGGACGCCACCAGGGCAAGCGCGTCGTCCTGTTGAAGGTCTTGGCCTC
CGGACTCCTGCTGGTCACCGGACCCTTCGCCCTCAACTCGTGCCCGCTGC
GTCGCGTGTCCCAGCGCTACGTGATCGGCACCTCCTCGAAGGTGGATCTC
GGTGCCTTCAAGGTGCCCGAGCACCTGAACGACGCCTACTTCCGCCGTCT
GAAGGCTAAGAAGGACAAGAAGACCGGCGAGGCCGACATCTTCGCGGCCA
AGAAGGAGCGCTTCGTGCCCAACGAGCAGCGCAAGAAGGACCAGAAGGAG
GTGGACGCCGCTCTGCTGAAGGTCATCAAGGCCCATCCCGAGGGCAAGTT
CTTCGCCAAGTACTTGCAGAACATGTTTGCCCTGCACTCCTCCCAATACC
CCCACCGCATGCGATTCGCAAGCTTTCTAGACCAT
FMO03493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL6-RB | 967 | CG11522-RB | 47..832 | 32..817 | 3915 | 99.9 | Plus |
| RpL6-RA | 910 | CG11522-RA | 233..775 | 275..817 | 2700 | 99.8 | Plus |
| RpL6-RA | 910 | CG11522-RA | 47..238 | 32..223 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31594927..31595604 | 817..140 | 3375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 31596048..31596158 | 142..32 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:00 has no hits.
FMO03493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:18 Download gff for
FMO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 42..837 | 23..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:14:52 Download gff for
FMO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 83..878 | 23..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:21 Download gff for
FMO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL6-RB | 42..837 | 23..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:21 Download gff for
FMO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31594922..31595601 | 143..823 | 99 | <- | Minus |
| 3R | 31596048..31596163 | 23..142 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:18 Download gff for
FMO03493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27420644..27421323 | 143..823 | 99 | <- | Minus |
| arm_3R | 27421770..27421885 | 23..142 | 96 | | Minus |
