FMO03494.5prime Sequence
778 bp (778 high quality bases) assembled on 2008-07-21
> FMO03494.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGGTCTTAGGT
CCCTGCGCATTTCCACAACGCAATCCGATTCCGCGTGCAGCAGTTCGGCG
GAATCGTCGGATTGCGAGAGCTCCAGCCACCATCACCACCACCACAGTCA
CCACAACTACAACGAGGCGCCCGTGGAGATAATCCCTGGACTACTCTTCC
TGGGAAATGCCACACACAGCTGCGACTCGGAAGCGTTGAAAAAGTACAAT
ATAAAGTATGTTTTGAATGTGACACCAGATTTGCCAAATAAGTTCAAGGA
GTCGGGCGACATCAAGTATCTGCAGATTCCGATCACGGATCACTACTCAC
AAGATTTGGCCATACATTTCCCGGATGCCATACAGTTTATAGAGGAAGCG
CGGTCCGCAAGCTCGGTGGTGCTGGTCCACTGCCTGGCCGGAGTTTCGCG
CTCGGTGACCGTGACGCTCGCCTACTTGATGCACACGCGGGGCCTGAGTC
TCAACGACGCCTTCGCGATGGTGCGGGACCGGAAGCCGGATGTATCGCCC
AACTTCCACTTCATGCAGCAGCTGCTGTCCTTCGAGAGCCAACTGCGCCT
GAGACCCGGCTCCAGGTTCTCGTGCAGCTGCATTGCGCCGGACTGCAATT
GCATGCAGACCACGGGCTTTATGGCCACCCATCTGGCGAATGCTACCGGG
GTCTCGCCAGACTCCGGCATCGAGTTCGATCGCTGGACCCCGTCGGACAC
GGGTCTTAAAGCAAGCTTTCTAGACCAT
FMO03494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkp3-RD | 4696 | CG14080-RD | 1214..1936 | 38..760 | 3615 | 100 | Plus |
| Mkp3-RC | 3119 | CG14080-RC | 1214..1936 | 38..760 | 3615 | 100 | Plus |
| Mkp3-RA | 2053 | CG14080-RA | 148..870 | 38..760 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19068915..19069284 | 760..391 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 19069682..19069891 | 256..47 | 1050 | 100 | Minus |
| 3L | 28110227 | 3L | 19069487..19069624 | 392..255 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1236..1272 | 127..162 | 110 | 81.1 | Plus |
FMO03494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:15 Download gff for
FMO03494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 28..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:39 Download gff for
FMO03494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 28..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:32 Download gff for
FMO03494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkp3-RA | 140..870 | 28..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:32 Download gff for
FMO03494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19068915..19069282 | 393..760 | 100 | <- | Minus |
| 3L | 19069487..19069622 | 257..392 | 100 | <- | Minus |
| 3L | 19069682..19069898 | 41..256 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:15 Download gff for
FMO03494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19062015..19062382 | 393..760 | 100 | <- | Minus |
| arm_3L | 19062587..19062722 | 257..392 | 100 | <- | Minus |
| arm_3L | 19062782..19062998 | 41..256 | 98 | <- | Minus |
