FMO03496.5prime Sequence
1070 bp (918 high quality bases) assembled on 2008-07-21
> FMO03496.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGGCCAGCA
TCATTTTAAGCGGCTGGCTGCTTTTGGCTTGGTTATACTTCCTGTGGAGC
CGGCGAAGGTATTATAAAGTCGCATGGCAGTTGCGCGGACCCATTGGCTG
GCCACTAATAGGCATGGGCTTACAAATGATGAACCCGGAGACGTTTTTGC
AGTACATGGATGGTCTGTCGCGACAGTTTAAAGCGCCTTTCATCTCCTGG
ATGGGCACCAGTTGTTTCCTCTACATCAACGATCCGCACAGCGTGGAGCA
GATATTGAACTCGACGCACTGCACCAATAAGGGCGATTTCTATCGGTTCA
TGAGCTCGGCCATTGGTGACGGACTGTTTACGTCTAGTTCGCCACGTTGG
CGCAAACATCGTCGCCTCATTAATCCCGCCTTTGGTCGCCAGATTCTCAG
CAACTTCCTGCCCATTTTCAATGCCGAAGCAGAGGTCCTTCTGCAGAAGC
TGGAGCTCGAGGGTGTGCAGCACGGTAAGCGGCTGGAAATCTACCAAATC
CTTAAGAAAATCGTTTTGGAAGCAGCTTGCCAGACAACGATGGGCAAGAA
AATGAACTTCCAGCACGATGGATCTTTATGCATATTTAAAGCTTATAATG
GCTTGACCGAAGTGTGTGTAAAAACGAATGCTATCGCCGTGGCTCTATCC
TGACTTAATATATCGTCGTTCCGGACTTTTTCCGCCTGCAGCAAAAGGTC
GTCGGCAATACTGTTTGGGTTTATAGAACAGCTTCTCGAACCCATAGTCT
CGGTAGTGGCCGCCCAATTCCAATCCGGATCCGCAGCGATCCGAAATGGA
GATGAAGGGGCAAGTCTAAAGCCATTTTCATTTGTCATGTGAGGAGCATG
TGGAGCGCGGCTAGCTTGAGTTGGCACGATGTGAGGATGAGCGAATGGTG
ACCATTTGCACAACTTTCGAGACCACCTCGACGGCATTGTACTTACCAAT
CCTCTGCCCTGGCAATGCATCCCTGCTACCAAGTAAAAACTTTCACAAGA
ATCGGTCACAGAGGATGCTG
FMO03496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-RB | 2138 | CG9716-RB | 162..1155 | 33..1031 | 4465 | 97.3 | Plus |
| Cyp313b1-RA | 2060 | CG9716-RA | 84..1077 | 33..1031 | 4465 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8644772..8645161 | 581..192 | 1935 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8645217..8645375 | 191..33 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 8644469..8644596 | 781..651 | 505 | 97.7 | Minus |
| 3R | 32079331 | 3R | 8644253..8644409 | 936..778 | 465 | 91.9 | Minus |
| 3R | 32079331 | 3R | 8644648..8644717 | 651..582 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 8644108..8644175 | 1031..963 | 235 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:34 has no hits.
FMO03496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:26 Download gff for
FMO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 77..1086 | 24..1041 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:53 Download gff for
FMO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 76..1085 | 24..1041 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:27 Download gff for
FMO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 77..1086 | 24..1041 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:27 Download gff for
FMO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8644108..8644175 | 963..1031 | 94 | <- | Minus |
| 3R | 8644226..8644405 | 782..962 | 89 | <- | Minus |
| 3R | 8644469..8644595 | 652..781 | 97 | <- | Minus |
| 3R | 8644648..8644717 | 582..651 | 100 | <- | Minus |
| 3R | 8644772..8645161 | 192..581 | 99 | <- | Minus |
| 3R | 8645217..8645382 | 24..191 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:26 Download gff for
FMO03496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4470939..4471104 | 24..191 | 98 | | Minus |
| arm_3R | 4469830..4469897 | 963..1031 | 94 | <- | Minus |
| arm_3R | 4469948..4470127 | 782..962 | 89 | <- | Minus |
| arm_3R | 4470191..4470317 | 652..781 | 97 | <- | Minus |
| arm_3R | 4470370..4470439 | 582..651 | 100 | <- | Minus |
| arm_3R | 4470494..4470883 | 192..581 | 99 | <- | Minus |
