FMO03504.5prime Sequence
907 bp (907 high quality bases) assembled on 2008-07-14
> FMO03504.5prime
ACATTATACGAAGTTATCAGTCGACATGTTCGGGAACCTGAAAAAGAAGC
TTAGCAGTGCGATCCAGGAGGGCCTGGTGATCTCGGAGAATCTGCAACAG
CAATATCGCCAGCGTGTCAGTTCCGGAAACTCGGGGAGTAGCCAAGCCAG
TGGGATTACGACCCCCATTTCGCCACTGGGCCTTAACGAAAGTCTGTCGT
CCAGCAGGAGCAGTAGCCTCTCCCTTAGTGCTCCCTTCCAGCTAACCGAT
GGAGTGCCCAGTCACCTAAATGTGGCAGCTGGTTGCAGTTTGCTTGCCAA
ATACGAGGATGATTGGCAGCAGATTCATGGCGCCAACGAAAAGAACGCGG
AGAAGGCTGCGCAGATTGCTAACCAAATCTCCGGCATCCAAGACCAGGCC
AGCCATCAGCACAGGATCATGAGTGAGCTGAACAGTAGTCTGGCGGGAAT
TCCCACGTTGATAGCCCAACTGCAAAACAGCTCACAGGTTCTTAATTCCC
TGGAGGAAATGGGTAAGCAGTTGGAGATTGAGCTCGAGAAGCTGGAGGAT
CTGCGCGAGGAGTGTGAGCTCCAAGAGTTCATCCTTGAGCAGCAGTTTCA
GCTCTCCCGGCACAAGCAAAAGAAACTGAACGAACTGGAGCAGTATCGCC
AGCAAATAGCCCAGAAACACCAATCCAAAATCAAGGATCAGGAGCAGACC
CTCCTGAAGCTGCAGAGGGAACGACAGGCTGTCTTCGACGACGCCTTCCG
GGAGGATATGGAGGAGTACAAACAGCGCGGCCAGCTGACAAAAATTCAAA
CCACCAGCAACAAGTTGGCTCTGGAGGAAGTCGTCCTTGAAGCCAACGAA
GTGGAGACAAAGGATGCTCTGGAACAATTTCTAAATGGCGCAAGCTTTCT
AGACCAT
FMO03504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dysb-RB | 1117 | CG6856-RB | 110..973 | 26..889 | 4320 | 100 | Plus |
| Dysb-RA | 1391 | CG6856-RA | 110..973 | 26..889 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18867880..18868645 | 26..791 | 3830 | 100 | Plus |
| 3L | 28110227 | 3L | 18868704..18868801 | 792..889 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2758..2868 | 612..722 | 132 | 60.2 | Plus |
FMO03504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:26 Download gff for
FMO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6856-RA | 97..972 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:34 Download gff for
FMO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dysb-RA | 103..978 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:11 Download gff for
FMO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dysb-RA | 103..978 | 17..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:11 Download gff for
FMO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18867873..18868645 | 17..791 | 99 | -> | Plus |
| 3L | 18868704..18868806 | 792..896 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:34 Download gff for
FMO03504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18860973..18861745 | 17..791 | 99 | -> | Plus |
| arm_3L | 18861804..18861906 | 792..896 | 97 | | Plus |
