FMO03505.5prime Sequence
425 bp (425 high quality bases) assembled on 2008-07-14
> FMO03505.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGACGACATC
AAGAAGTATTTAGACGGCCTGCTGCAAAAGGTCAGCGGGCTGTACGTTAT
TCAGATTACGGATCGCGACGGAGTGCCCCTCCTGCGGGTTAGCCAGGAGA
AGAACGTGGACTTCGCCCTGATGCCCTCGTTCATACCCACATTCACCACC
GCCTGCGATCAGGCCAGCAAACTGGGATTGGGCAGAAACAAGACCATCAT
CTCCATGTACTCCAATTACCAGGTGGTCCAGATGAACAAGCTGCCGCTCA
TCCTGACCTTTGTGGGCGCGGAGAACTGTAACACGGGACACATTCTCGCA
CTGGAGCACCAGGTCGATGGCTATTTGGAGGACATTAAACAGGCTGTCAC
CGAGGCCGCAAGCTTTCTAGACCAT
FMO03505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-RB | 729 | CG5110-RB | 103..475 | 35..407 | 1865 | 100 | Plus |
| CG5110-RA | 548 | CG5110-RA | 103..475 | 35..407 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17481452..17481783 | 76..407 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 17481333..17481378 | 35..80 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:43:35 has no hits.
FMO03505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:14:59 Download gff for
FMO03505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 86..473 | 31..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:41 Download gff for
FMO03505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 31..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:27 Download gff for
FMO03505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 31..419 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:27 Download gff for
FMO03505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17481331..17481377 | 31..79 | 95 | -> | Plus |
| 2L | 17481456..17481796 | 80..419 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:41 Download gff for
FMO03505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17481331..17481377 | 31..79 | 95 | -> | Plus |
| arm_2L | 17481456..17481796 | 80..419 | 98 | | Plus |
