FMO03510.5prime Sequence
904 bp (381 high quality bases) assembled on 2008-07-14
> FMO03510.5prime
CATATAAAAAAAAAAGTTATCAGTCGACATGCCGAAACCCGGTGACTTGG
CGAAGGTGAAGGTGAACGTCAAGGAGCGGGTGGTGGACGAAACCTGCGAC
TTGAGTCTCTCCGAACTGAGCTAAATACCGGTGCGGGAGATCGCTTCGTT
CAAGCGCGTCACCGTTTTGGATCTCTCCAGCAATCGTCTGGTCAACTTGG
GAAAAAACTTTTCGATTCTCACACGCTTGGTGCGCCTGGACCTAAGCAAG
AACCAAATAAAATTCCTGCCCGAGGACTTTGGCCAGCTGGAGCAGTTGCG
CCACTTGGACTTGTACAACAATTGCTTGGAGCACCTGCCCATTAGCTTCG
GTCAGCTGCGTCGTTTGCGGTACTTAGACCTGAAGGGGAATCCACTGACG
CCCGCCTGGGAGAAGATTGTGGGCTGCTGCTCCACGCAAAAGGACTTGCC
AGCAGGCGGCCAAGAATACAGTCAGCATCTGCGCCAACTACAAGCCGGAA
TTCATTGAACGCGAACGTTTGGCCGCCCAAGAGAGCCAGAAAATGGCCGG
AGCCGGGGATTCCAGTGCCAACGCCGTTCAAACGAATGGCGGCGCAGCTG
GTGGAAAGAAAGTCGACGAAACCGAATAATAAGAAAGCCAAAGCTAAAAA
ACTCGCCGGTGGGGGGAGACAATGAGCTGACAATCAAACCATAAATGCAG
TGGGATCAGGAGGATCAGGAGCAATCGCACTGGGATCCAATCAACTCAAA
GACAATCAAAAGAAAAAGAACTCGAAAGGCGATTCCTGGTTGATCTACTG
TCCAGAGCTGCCCTATCGTCGCTGGTCAGCTTTCTGGGTTCTCTTTATCA
TCAACTTGTTAATCATTTACATGATCCATGTCAGAATCCCGGACTTCGCC
GAAT
FMO03510.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3408-RA | 1888 | CG3408-RA | 128..1006 | 25..902 | 4010 | 97.9 | Plus |
| CG3408-RB | 1876 | CG3408-RB | 128..994 | 25..902 | 3820 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9507726..9508133 | 876..471 | 1660 | 97.6 | Minus |
| 3L | 28110227 | 3L | 9508218..9508486 | 472..203 | 1300 | 99.6 | Minus |
| 3L | 28110227 | 3L | 9509338..9509456 | 143..25 | 535 | 96.6 | Minus |
| 3L | 28110227 | 3L | 9508565..9508624 | 202..143 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:53 has no hits.
FMO03510.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:24 Download gff for
FMO03510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 116..1003 | 14..902 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:02 Download gff for
FMO03510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 119..1006 | 14..902 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:17 Download gff for
FMO03510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3408-RA | 119..1006 | 14..902 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:17 Download gff for
FMO03510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9508220..9508486 | 203..470 | 99 | <- | Minus |
| 3L | 9508565..9508624 | 143..202 | 100 | <- | Minus |
| 3L | 9509339..9509462 | 18..142 | 94 | <- | Minus |
| 3L | 9507700..9508133 | 471..902 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:02 Download gff for
FMO03510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9500800..9501233 | 471..902 | 96 | <- | Minus |
| arm_3L | 9501320..9501586 | 203..470 | 99 | <- | Minus |
| arm_3L | 9501665..9501724 | 143..202 | 100 | <- | Minus |
| arm_3L | 9502439..9502562 | 18..142 | 94 | <- | Minus |
