FMO03511.5prime Sequence
460 bp (460 high quality bases) assembled on 2008-07-14
> FMO03511.5prime
TATAGCATACTAAAAAAAAAAGTTATCAGTCGACATGAAATCCACCATAT
CTTTGCTACTGGTCGTTATCTGCACCGTGGTCCTGGCCGCGCAACAGAGC
CAAGCGAAAAAGGGATGCCAGGCCTACGGTCATGTGTGCTACGGTGGTCA
TGGCAAGCGCTCTCTGAGCCCCGGATCCGGGTCTGGAACGGGAGTGGGCG
GGGGAATGGGCGAGGCAGCCTCCGGGGGGCAGGAACCGGACTATGTGCGT
CCGAATGGCCTACTGCCCATGATGGCGCCAAATGAACAGGTGCCGCTCGA
GGGCGACTTTAATGACTATCCCGCCCGTCAGGTGCTTTACAAAATCATGA
AATCATGGTTTAACCGACCTCGCCGACCCGCCTCTCGCCTGGGTGAACTT
GATTATCCCTTGGCCAATTCCGCCGAATTGAATGGCGTGAACGCAAGCTT
TCTAGACCAT
FMO03511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa2-RC | 1322 | CG14375-RC | 297..705 | 34..442 | 2045 | 100 | Plus |
| CCHa2-RB | 1281 | CG14375-RB | 256..664 | 34..442 | 2045 | 100 | Plus |
| CCHa2-RA | 1167 | CG14375-RA | 142..550 | 34..442 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13390048..13390295 | 358..111 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 13389676..13389760 | 442..358 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 13391865..13391941 | 110..34 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:22:51 has no hits.
FMO03511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:14:58 Download gff for
FMO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14375-RA | 130..547 | 28..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:30:17 Download gff for
FMO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2-RA | 137..554 | 28..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:50 Download gff for
FMO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa2-RA | 137..554 | 28..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:50 Download gff for
FMO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13389672..13389759 | 359..447 | 97 | <- | Minus |
| 3R | 13390048..13390295 | 111..358 | 100 | <- | Minus |
| 3R | 13391865..13391945 | 32..110 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:30:17 Download gff for
FMO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9215394..9215481 | 359..447 | 97 | <- | Minus |
| arm_3R | 9215770..9216017 | 111..358 | 100 | <- | Minus |
| arm_3R | 9217587..9217667 | 32..110 | 97 | <- | Minus |
