FMO03512.5prime Sequence
1235 bp (954 high quality bases) assembled on 2008-07-14
> FMO03512.5prime
CGTATAGCATAATAATACGAAGTTATCAGTCGACATGGGCAACACGAGTT
CCCAGGGCGAGTCGGACGCCAGTGAGCCACCCCTGGAGGGAGGCAAGCCG
TACAAGCAGCATCAGCAGCACAAGTCCAGTGATGCTTCCCACAACGGAGT
CTCTGACGTGGGCGGCAGCCACAACAATCTAAAGGTGACGCAGGCGCAGG
GCTCGATGACCAGGTCGGCTTCTGGCGCGGATGTCACCGAGAAGTACCTC
ACCCAGCTGGTGCCGGTGGAGAAGCTAGCCGAGATTCTCAGGGAGCAGAC
ATCGTCCAAACTGGGCATTAATGGCATTGTGGCAGATGTCTTTGTGTCAC
AAGTCTTTCCGCAGTACGCCGACCTGGGACAGCGGCTGTTCAACCTGATG
CACTCCAACTCCAAGGCCACAACGAAACATCTGGGCGCCGTTGCTTTCCG
GCAACAGTGCGAACGCTTTTTGGGCATCATGGATGACTCGAAGACGCTGG
AGTGCTACATTAAGATGTACGCCCAGGAGGAGAATCCGGACCAAATTGAC
AAGACGGGAGTGACGCGGTTGCTCCACATCTGCTACACCATTGCCATGCA
GCACTCGGGCAACGCCGTGCTGTGCCCGGCCATCAACCGCACGTTCGGTT
CGGTGACCAAGTCCATTTTCCTGTGCCACGACAGTATGAGTCTGGGCTAC
GTTTGCCGCTGGTTCGAGCAGAACCTGATGCGGCTGGTGCTCCTCGTGCA
CAAGTACTGTGTGCACACTTTGTCAACCGCTTACCGTGGTCTAGAGCAGC
AGAATCAGTCATGCGGCATTGAGTTGCAGACGCCGGTGCTTGAGCAACGT
AATCCCTTCACAGATACCACCGACTTTAGTGGCGGTAGCACGAGGGAAGA
TGGACTCGCTGATGCCGCTTTCGCAAGCCTGGCTGCTGGCTGGAGCTCTG
CCGCCACTCTACTCCAAGCCTCCAAACTGTGACAACGGCAGCCACAAGGG
AAACAACACGTTAGCGCGTCACAGTGGTACAGATTTTCAGGAAAGCTGTC
GATTGATGCCGTTCACTTGGTACACTGCTGTACACTTCAATGGAGCTGGG
CAGGGGAACCAACAGTTTCTGCCACCGTCCCTCGGGCTATCGGTCACACC
TGTTCCTCGTACTCTTACCAGGCTGAACGAGTTGCCGTGCTTCCTCAATG
AAGTGAACGACAGCCCACTCGTATTTGTGAGGCCG
FMO03512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4658-RE | 1953 | CG4658-RE | 295..1404 | 35..1143 | 4925 | 97 | Plus |
| CG4658-RD | 2486 | CG4658-RD | 458..1567 | 35..1143 | 4925 | 97 | Plus |
| CG4658-RA | 2323 | CG4658-RA | 295..1404 | 35..1143 | 4925 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9957959..9958653 | 346..1039 | 3175 | 98.7 | Plus |
| 2L | 23513712 | 2L | 9957589..9957900 | 35..346 | 1530 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:14 has no hits.
FMO03512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:51 Download gff for
FMO03512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4658-RA | 294..1376 | 25..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:16 Download gff for
FMO03512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4658-RA | 286..1368 | 25..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:58 Download gff for
FMO03512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4658-RA | 286..1368 | 25..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:58 Download gff for
FMO03512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9957580..9957900 | 25..346 | 98 | -> | Plus |
| 2L | 9957960..9958721 | 347..1107 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:16 Download gff for
FMO03512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9957580..9957900 | 25..346 | 98 | -> | Plus |
| arm_2L | 9957960..9958721 | 347..1107 | 97 | == | Plus |
