FMO03513.5prime Sequence
891 bp (891 high quality bases) assembled on 2008-07-14
> FMO03513.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCACACAACGTGG
ACGTGGAAAAGTGCTTAGAGGTGGCCAGCAACCTGGTTTCCGAAGCCGGA
AGGCTCATCGCTCGCAACAATGAGCAGCGACAGGACTTCGTTTGCAAGAG
CAATGACATCGACTTGGTGACCCAAACAGACAAGGATGTGGAGCAGCTGC
TGATGGACGGCATTCGTCGCCACTTTCCGGAGCACAAGTTCATCGGCGAG
GAGGAGAGTAGCGGCGCGGAGGGTGTCAAGAAGCTGACCGATGAGCCCAC
CTGGATCATTGATCCCGTGGACGGCACCATGAACTTTGTGCACGCCTTTC
CGCACTCTTGCATCTCCGTGGGTCTGAAGGTGAACAAGGTCACGGAGCTG
GGCTTGGTCTACAATCCCATTCTAGAGCAACGCTTTACTGCGAGACGAGG
GCACGGAGCCTTCTACAACGGGCGCAGGATCCACGTTAGCGGCCAGAAGG
AACTGGGCAAAGCGCTGGTTACCAGTGAATTCGGTACCACCCGGGACGAG
GCCAAGATGAAGGTCGTGCATGAAAACTTCGAGAAGATGGCCAAAAAGGC
GCATGGCCTACGGGTCCTGGGTTCGGCAGCTCTCAATATGTCGATGGTTG
CTTTGGGAGCCGCCGACGCTAACTATGAATTTGGAATTCACGCCTGGGAT
GTGTGTGCCGGCGACTTGATTGTCCGGGAGGCCGGAGGCGTGGTCATCGA
TCCTGCTGGCGGCGAATTCGACATCATGTCTCGAAGGGTCCTGGCGGCAG
CCACACCAGAGTTGGCCCAAAGAGATCTCCAAGGTGCTAACGCAGTTTAA
TCCCCTTCCTCGCGATGATGCAAGCTTTCTAGACCATTCGT
FMO03513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9391-RC | 1171 | CG9391-RC | 174..1007 | 35..869 | 4150 | 99.9 | Plus |
| CG9391-RA | 1104 | CG9391-RA | 107..940 | 35..869 | 4150 | 99.9 | Plus |
| CG9389-RA | 2043 | CG9389-RA | 1214..1301 | 284..371 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21267167..21267535 | 606..238 | 1845 | 100 | Minus |
| 3L | 28110227 | 3L | 21266844..21267106 | 869..606 | 1270 | 99.6 | Minus |
| 3L | 28110227 | 3L | 21267585..21267721 | 239..103 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 21267791..21267859 | 103..35 | 345 | 100 | Minus |
| 3L | 28110227 | 3L | 21269202..21269289 | 371..284 | 260 | 86.4 | Minus |
| 3L | 28110227 | 3L | 15977335..15977429 | 282..376 | 190 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 20:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1494..1547 | 786..733 | 108 | 66.7 | Minus |
FMO03513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:01 Download gff for
FMO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 84..921 | 35..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:59 Download gff for
FMO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 107..944 | 35..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:34 Download gff for
FMO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9391-RA | 107..944 | 35..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:34 Download gff for
FMO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21266840..21267105 | 607..874 | 98 | <- | Minus |
| 3L | 21267167..21267535 | 238..606 | 100 | <- | Minus |
| 3L | 21267587..21267720 | 104..237 | 100 | <- | Minus |
| 3L | 21267791..21267871 | 25..103 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:59 Download gff for
FMO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21259940..21260205 | 607..874 | 98 | <- | Minus |
| arm_3L | 21260267..21260635 | 238..606 | 100 | <- | Minus |
| arm_3L | 21260687..21260820 | 104..237 | 100 | <- | Minus |
| arm_3L | 21260891..21260971 | 25..103 | 92 | <- | Minus |
