Clone FMO03514 Report

Search the DGRC for FMO03514

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptRpL40-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03514.5prime Sequence

434 bp (434 high quality bases) assembled on 2008-07-14

> FMO03514.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGCAGATCTTCGTGAAA
ACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCTGACACCAT
CGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATC
AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTG
TCCGACTACAACATTCAGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCT
GCGTGGTGGTATCATTGAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACA
ACTGCGACAAGATGATCTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGT
GCCACCAACTGCCGCAAGAAGAAGTGCGGACACACCAACAACCTGCGCCC
CAAGAAGAAGTTGAAGGCAAGCTTTCTAGACCAT

FMO03514.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL40-RB 659 CG2960-RB 123..506 33..416 1920 100 Plus
RpL40-RA 587 CG2960-RA 65..448 33..416 1920 100 Plus
Ubi-p63E-RD 2624 CG11624-RD 808..1037 33..262 790 89.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4228025..4228408 33..416 1920 100 Plus
3L 28110227 3L 3899706..3899935 262..33 790 89.6 Minus
3L 28110227 3L 3900162..3900391 262..33 790 89.6 Minus
3L 28110227 3L 3900846..3901075 262..33 790 89.6 Minus
X 23542271 X 6278294..6278521 259..32 765 89 Minus
3L 28110227 3L 3900390..3900619 262..33 760 88.7 Minus
3L 28110227 3L 3899934..3900163 262..33 760 88.7 Minus
3L 28110227 3L 3900618..3900847 262..33 760 88.7 Minus
3L 28110227 3L 3901074..3901303 262..33 760 88.7 Minus
3L 28110227 3L 3899477..3899707 263..33 750 88.3 Minus
3L 28110227 3L 3901302..3901531 262..33 745 88.3 Minus
3L 28110227 3L 3901530..3901759 262..33 730 87.8 Minus
2L 23513712 2L 10409731..10409958 33..260 705 87.3 Plus
Blast to na_te.dros performed on 2014-11-28 20:13:20 has no hits.

FMO03514.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-07-14 18:15:53 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:20 Download gff for FMO03514.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL40-RA 65..448 33..416 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:00 Download gff for FMO03514.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL40-RA 65..448 33..416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:00 Download gff for FMO03514.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4228025..4228408 33..416 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:20 Download gff for FMO03514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4228025..4228408 33..416 100   Plus