FMO03515.5prime Sequence
624 bp (624 high quality bases) assembled on 2008-07-14
> FMO03515.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGATAAAAGCCATTCT
CGTTTTTAACAATCACGGGAAGCCGCGGCTATCGAAGTTCTATCAGTATT
TCGATGAAAGCCTGCAGCAACAAATAATCAAAGAGACTTTCCAATTGGTG
TCCAAGCGGGACGATAATGTTTGCAACTTTCTGGAGGGCGGAAGTTTGAT
TGGCGGATCGGATTACAAACTCATCTACAGACACTATGCCACGCTGTACT
TCGTTTTCTGCGTGGACTCCTCGGAGAGCGAACTGGGAATCCTGGACCTG
ATTCAGGTGTTCGTGGAAACCCTCGACAAGTGCTTCGAAAACGTGTGTGA
GCTGGACCTGATATTCCACGCCGATGCCGTCCACCACATCCTCTCAGAAC
TGGTAATGGGCGGAATGGTCCTGCAGACAAATATGAACGACATAATGGCC
AGGATCGAGGAGCAGAACAAGATCGTCAAGCAGGAAGCGGGCATCTCGGC
TGCACCTGCCCGAGCTGTGAGCGCCGTGAAGAGTATGAACATTCCGCAAC
AGATTAAAGACATCAAGCTACCTGATCTGCCGCAGGCCATTAAGGACTTT
AAGTTCGCAAGCTTTCTAGACCAT
FMO03515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| or-RA | 823 | CG3029-RA | 75..654 | 27..606 | 2870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23968562..23968774 | 394..606 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 23968304..23968508 | 193..397 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 23968153..23968244 | 103..194 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 23968013..23968089 | 27..103 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:12 has no hits.
FMO03515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:02 Download gff for
FMO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 65..655 | 22..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:23 Download gff for
FMO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 22..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:16 Download gff for
FMO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| or-RA | 70..660 | 22..610 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:16 Download gff for
FMO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23968008..23968088 | 22..102 | 95 | -> | Plus |
| 2R | 23968153..23968244 | 103..194 | 100 | -> | Plus |
| 2R | 23968306..23968508 | 195..397 | 100 | -> | Plus |
| 2R | 23968566..23968780 | 398..610 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:23 Download gff for
FMO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19855531..19855611 | 22..102 | 95 | -> | Plus |
| arm_2R | 19855676..19855767 | 103..194 | 100 | -> | Plus |
| arm_2R | 19855829..19856031 | 195..397 | 100 | -> | Plus |
| arm_2R | 19856089..19856303 | 398..610 | 99 | | Plus |
