Clone FMO03516 Report

Search the DGRC for FMO03516

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:16
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34362-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03516.5prime Sequence

1210 bp (1062 high quality bases) assembled on 2008-07-14

> FMO03516.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGCCATGCCCA
CGCTGATGATGCCAGCCACCGCCCAGATGACGCTCAGCGCCGCCCACGGA
AAGCCCTACGAGACAAAGCTGCTGGCCATCCACCAGACGCACCTCCAGCA
GCAGCAGCAGCAACAGGCACCCGCTCCACCGCAGCAGCAGCAGCAGGTGC
AGCAGTCGCAGCAGCAGGCACCCAACGGCAAGCAGCAGTCGCAGCAGATG
ACCATTGTCACCACCCAGCAGCAGCAGCAACAGCAGCATCCCCAGTCGCA
GTCGCCGCACCAGCAGCAGCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCG
CCGCTGCAGCCGCAGCAGCCCACCATCAGCAGCAGCAGGCGGTGGCCGCA
GCAGTCTGTGCTGCCCAGCAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCA
GCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGG
TGCTCTGCATCTCGCCCAAGCAGGAACAATTCCACATCTTTGTCGGCGAC
TTGAGCTCAGAAATTGAAACTCAGCAATTGCGCGAAGCATTCACACCATT
CGGCGAAATCTCCGACTGTCGCGTGGTGCGCGATCCACAAACCTTGAAGT
CGAAGGGCTATGGCTTTGTGTCCTTCATCAAGAAATCGGAAGCCGAAAGC
GCCATCACGGCCATGAATGGCCAATGGCTTGGCTCCCGCTCAATTCGCAC
GAATTGGGCCACACGGAAACCGCCGGCGAGTAAAGAGAACATCAAGCCGT
TGACCTTCGACGAGGTCTACAATCAGAGCAGTCCCTCCAATTGCACCGTT
TACGTGGGCGGCGTCAACAGCGCCCTCACCGCCCTCAGCGAGGAGGTCCT
CCAGAAGACCTTCGCCCCCTACGGCGCGATACAGGAGATTCGCGTCTTCA
AGGACAAGGGATACGCTTTCGTGCGCTCTCCACCAGGAAGGCGGCCACTC
ACGCCATCGTGGGCGTACACAACACGAGATCACGCCCAGCCGTGAAGTGC
TCGTGGGGCAGGAAAGTGGTGACCCAACATGCCAAGACATCGCCACCAGC
CTGAAACAGTGCCCCGCTGCTGCCGCGATTCCGGTTGGGATTGACGCTGC
TGCCCGCGCCTACGGACAGGCCTGGGCTGCCATGGGGGTGCTGTGGTAAT
CGCCTCCCGG

FMO03516.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RF 7452 CG34362-RF 650..1752 35..1126 5130 98.4 Plus
CG34362-RE 5991 CG34362-RE 650..1752 35..1126 5130 98.4 Plus
CG34362-RJ 2530 CG34362-RJ 650..1752 35..1126 5130 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28049817..28050306 35..524 2450 100 Plus
3R 32079331 3R 28082899..28083090 784..975 960 100 Plus
3R 32079331 3R 28078535..28078632 688..785 490 100 Plus
3R 32079331 3R 28075676..28075764 524..612 445 100 Plus
3R 32079331 3R 28078161..28078237 613..689 385 100 Plus
3R 32079331 3R 28235268..28235453 793..975 370 81.2 Plus
3R 32079331 3R 28083232..28083334 977..1075 270 93.2 Plus
3R 32079331 3R 28235074..28235163 688..777 270 86.7 Plus
Blast to na_te.dros performed on 2014-11-28 19:17:30 has no hits.

FMO03516.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:46 Download gff for FMO03516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 637..1808 27..1175 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:35 Download gff for FMO03516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 640..1811 27..1175 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:38 Download gff for FMO03516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RJ 640..1811 27..1175 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:38 Download gff for FMO03516.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28049807..28050306 27..524 99 -> Plus
3R 28075677..28075764 525..612 100 -> Plus
3R 28078161..28078236 613..688 100 -> Plus
3R 28078536..28078632 689..785 100 -> Plus
3R 28082901..28083090 786..975 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:35 Download gff for FMO03516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23875529..23876028 27..524 99 -> Plus
arm_3R 23901399..23901486 525..612 100 -> Plus
arm_3R 23903883..23903958 613..688 100 -> Plus
arm_3R 23904258..23904354 689..785 100 -> Plus
arm_3R 23908623..23908812 786..975 100 -> Plus