FMO03516.5prime Sequence
1210 bp (1062 high quality bases) assembled on 2008-07-14
> FMO03516.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGCCATGCCCA
CGCTGATGATGCCAGCCACCGCCCAGATGACGCTCAGCGCCGCCCACGGA
AAGCCCTACGAGACAAAGCTGCTGGCCATCCACCAGACGCACCTCCAGCA
GCAGCAGCAGCAACAGGCACCCGCTCCACCGCAGCAGCAGCAGCAGGTGC
AGCAGTCGCAGCAGCAGGCACCCAACGGCAAGCAGCAGTCGCAGCAGATG
ACCATTGTCACCACCCAGCAGCAGCAGCAACAGCAGCATCCCCAGTCGCA
GTCGCCGCACCAGCAGCAGCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCG
CCGCTGCAGCCGCAGCAGCCCACCATCAGCAGCAGCAGGCGGTGGCCGCA
GCAGTCTGTGCTGCCCAGCAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCA
GCAGCAGTACCAGATCCACTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGG
TGCTCTGCATCTCGCCCAAGCAGGAACAATTCCACATCTTTGTCGGCGAC
TTGAGCTCAGAAATTGAAACTCAGCAATTGCGCGAAGCATTCACACCATT
CGGCGAAATCTCCGACTGTCGCGTGGTGCGCGATCCACAAACCTTGAAGT
CGAAGGGCTATGGCTTTGTGTCCTTCATCAAGAAATCGGAAGCCGAAAGC
GCCATCACGGCCATGAATGGCCAATGGCTTGGCTCCCGCTCAATTCGCAC
GAATTGGGCCACACGGAAACCGCCGGCGAGTAAAGAGAACATCAAGCCGT
TGACCTTCGACGAGGTCTACAATCAGAGCAGTCCCTCCAATTGCACCGTT
TACGTGGGCGGCGTCAACAGCGCCCTCACCGCCCTCAGCGAGGAGGTCCT
CCAGAAGACCTTCGCCCCCTACGGCGCGATACAGGAGATTCGCGTCTTCA
AGGACAAGGGATACGCTTTCGTGCGCTCTCCACCAGGAAGGCGGCCACTC
ACGCCATCGTGGGCGTACACAACACGAGATCACGCCCAGCCGTGAAGTGC
TCGTGGGGCAGGAAAGTGGTGACCCAACATGCCAAGACATCGCCACCAGC
CTGAAACAGTGCCCCGCTGCTGCCGCGATTCCGGTTGGGATTGACGCTGC
TGCCCGCGCCTACGGACAGGCCTGGGCTGCCATGGGGGTGCTGTGGTAAT
CGCCTCCCGG
FMO03516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RF | 7452 | CG34362-RF | 650..1752 | 35..1126 | 5130 | 98.4 | Plus |
CG34362-RE | 5991 | CG34362-RE | 650..1752 | 35..1126 | 5130 | 98.4 | Plus |
CG34362-RJ | 2530 | CG34362-RJ | 650..1752 | 35..1126 | 5130 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28049817..28050306 | 35..524 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 28082899..28083090 | 784..975 | 960 | 100 | Plus |
3R | 32079331 | 3R | 28078535..28078632 | 688..785 | 490 | 100 | Plus |
3R | 32079331 | 3R | 28075676..28075764 | 524..612 | 445 | 100 | Plus |
3R | 32079331 | 3R | 28078161..28078237 | 613..689 | 385 | 100 | Plus |
3R | 32079331 | 3R | 28235268..28235453 | 793..975 | 370 | 81.2 | Plus |
3R | 32079331 | 3R | 28083232..28083334 | 977..1075 | 270 | 93.2 | Plus |
3R | 32079331 | 3R | 28235074..28235163 | 688..777 | 270 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:30 has no hits.
FMO03516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:46 Download gff for
FMO03516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 637..1808 | 27..1175 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:35 Download gff for
FMO03516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 640..1811 | 27..1175 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:38 Download gff for
FMO03516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RJ | 640..1811 | 27..1175 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:38 Download gff for
FMO03516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28049807..28050306 | 27..524 | 99 | -> | Plus |
3R | 28075677..28075764 | 525..612 | 100 | -> | Plus |
3R | 28078161..28078236 | 613..688 | 100 | -> | Plus |
3R | 28078536..28078632 | 689..785 | 100 | -> | Plus |
3R | 28082901..28083090 | 786..975 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:35 Download gff for
FMO03516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23875529..23876028 | 27..524 | 99 | -> | Plus |
arm_3R | 23901399..23901486 | 525..612 | 100 | -> | Plus |
arm_3R | 23903883..23903958 | 613..688 | 100 | -> | Plus |
arm_3R | 23904258..23904354 | 689..785 | 100 | -> | Plus |
arm_3R | 23908623..23908812 | 786..975 | 100 | -> | Plus |