FMO03518.5prime Sequence
700 bp (700 high quality bases) assembled on 2008-07-14
> FMO03518.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAATAAAATATTTG
GGCTACTGTTTACCCTGTGTCTGCTGCTCGTTTGGCCCACGCCCGGAAAT
GGCCAGTCCCCGGATGAGTCCCGGCTCCTGGTGGCCATTCACTACGAGGC
CCTGTGCCCGGACAGCATGAGCTTCATCCGGCGCAGATTGTACGATGCTC
TGCAGGACAACGACTGGTGGTCGGTCACCGATCTAAAGCTATATCCATTT
GGCAAGGCGGGGTTCTACAACAACACATCCACTGGCGAGAGCCAAGTATT
TTGTCAGCATGGCGTGGATGAGTGCGAACTAAATGCACTCCATGCCTGCA
TTATTGAGACCCTGGACATTCGGAAGGCCTTCAATCTGATCTACTGCATG
CTGCGCTCCTATTCGAATGAGCTGGGCCCGTGCTCGAGGAGCATGGGTGT
GGACGTCAGCAAGGCCAGGGAGTGTAAGGCATCCCGAACCACGGCAGAAA
TACTGGCGCCCTACGGCAAGGAAACCCTTAAACTGGGCATCTCCTTTGTG
CCCACCATTGTGTTCGAGAATGACTTTGATCCTTACGACCAGAGAAGCAT
TCGCAACAACTTCGAAAGACACTTCTGTCGGCAGTATCTGAAAAAGTTCA
ACATCAAACTGCCCACTTGTTCCGCAATTTTGGCAAGCTTTCTAGACCAT
FMO03518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GILT3-RA | 773 | CG13822-RA | 53..700 | 35..682 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23677855..23678165 | 262..572 | 1555 | 100 | Plus |
| 3R | 32079331 | 3R | 23677410..23677637 | 35..262 | 1140 | 100 | Plus |
| 3R | 32079331 | 3R | 23678238..23678348 | 572..682 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 240..189 | 113 | 71.2 | Minus |
FMO03518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:29 Download gff for
FMO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13822-RA | 49..710 | 32..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:49 Download gff for
FMO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13822-RA | 49..710 | 32..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:07 Download gff for
FMO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GILT3-RA | 49..710 | 32..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:07 Download gff for
FMO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23677406..23677637 | 32..262 | 99 | -> | Plus |
| 3R | 23677856..23678164 | 263..571 | 100 | -> | Plus |
| 3R | 23678238..23678358 | 572..694 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:49 Download gff for
FMO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19503128..19503359 | 32..262 | 99 | -> | Plus |
| arm_3R | 19503578..19503886 | 263..571 | 100 | -> | Plus |
| arm_3R | 19503960..19504080 | 572..694 | 96 | | Plus |
