FMO03519.5prime Sequence
574 bp (574 high quality bases) assembled on 2008-07-14
> FMO03519.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCACGGCTCGG
ATGACAGCACCAGCACGGCCAAGTCCTGCCCTATGATCATGGTGTTCCAC
GCTGGACACTGCGAGCGAATTTTGTGGCGCGGATGGGTGGCGTCCACTGT
GACGGAGTTCGTGCTCTCCGCCCTGGCCATCTTCCTGGTGTCCTTCCTGT
ATGAGGCGCTCAAGTTCCTGCGACAGCAACTGGCGCGCAGGGAAGCCCGT
CGAGCAAGCGAGCAGCTGGCGGCGGAGCAGCGTAGGAAGAACGAGGCTCC
GGCAGCCGGAGGATGCTGCTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGC
AGACCTACTGGCAGCGCTTGTTCGCCTCGTCGCACATCGTCCAGTCCCTG
CTGAACCTGCTGCAGATCGTCATCTCGTACCTGCTGATGCTGATCTTCAT
GACCTTCAACTACTGGCTGTGCCTGGCAGTGATCCTGGGACTGGGTCTGG
GCTACTTCTTCTTCGGCTGGAACAAGAAGAATCCCGACGAGAGCGAGTGC
TGTCCTGCAAGCTTTCTAGACCAT
FMO03519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ctr1B-RA | 953 | CG7459-RA | 126..647 | 35..556 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8318437..8318899 | 94..556 | 2315 | 100 | Plus |
| 3R | 32079331 | 3R | 8317737..8317796 | 35..94 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:43:59 has no hits.
FMO03519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:05 Download gff for
FMO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 111..641 | 27..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:19 Download gff for
FMO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 117..647 | 27..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:18 Download gff for
FMO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ctr1B-RA | 117..647 | 27..556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:18 Download gff for
FMO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8318438..8318899 | 95..556 | 100 | | Plus |
| 3R | 8317728..8317796 | 27..94 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:19 Download gff for
FMO03519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4143450..4143518 | 27..94 | 94 | -> | Plus |
| arm_3R | 4144160..4144621 | 95..556 | 100 | | Plus |
