Clone FMO03520 Report

Search the DGRC for FMO03520

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:20
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1738-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03520.5prime Sequence

599 bp (599 high quality bases) assembled on 2008-07-14

> FMO03520.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACGTCAGCGCC
GATTTTAAGCCGGTGCCCACGCGTGCAGCGTTGGCGCTGCAAAAGAAGCA
GGAGAACACCGAATTTCAGGCACACGTCTTCCACGAATCGCACTTCCAAT
CGAAAAGTGGAACAAAAAAGCAGGACGACGGCGTCCAAAAATCGCACAAA
ACCAAGGAGGGCGGCATGGAACTGAATCCCGAATTCGATATCAAGAAGGC
GCGCCACGAGGTGCTCAATTTTGCGATCAAAAACCAGCGTGTGATCAAAA
ACAAGAGCAAAATGGAAATGTTTCAGCTGATCAAGCTGGGCGCCAAGCCG
CTGAAGAAGGCCTCCAAAAACTACAAGGAGCTGAAGGACGAACGCCAGCG
GCTGAAGAATATTCGCGAGGAGCGCAAGAAGTTCCATCAGTTGGGCAAAA
ATCAAACGGGCGCCGCCAGCGTCAAATGCCGAACAAAATCGCAAAAGGAG
CGCAACGACAAGAGGCGCGCGCCCGTTTCACACATCGATCAGCACTACGG
CAAGGCGCAGCCCAAGTTTAAGACGAGAAAAGCAAGCTTTCTAGACCAT

FMO03520.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..669 36..581 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349717 36..581 2730 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:14:38 has no hits.

FMO03520.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:42 Download gff for FMO03520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 115..669 28..589 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:30 Download gff for FMO03520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 28..589 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:57 Download gff for FMO03520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 28..589 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:57 Download gff for FMO03520.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11349168..11349722 28..589 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:30 Download gff for FMO03520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243201..11243755 28..589 98   Plus