FMO03521.5prime Sequence
963 bp (963 high quality bases) assembled on 2008-07-14
> FMO03521.5prime
TATAGCATACCTTATACCAAGTTATCAGTCGACATGAGAATGTACGACGC
GTTGGAACGCTGCCCAGGAGCCTACTGTGGGCGATCACCGCTAGGAAACA
ACAGCTGGAGCAGCTGCGGGGTCTGTCCCAGAGGATCTCGGGTGAACCAA
AGTTACGCATGCTCTCCATGCCGCGACGAGTTAAGCACGTACTCCTGGCT
ATACCTGGGATTCATGACCATGCTGCCACTTATGATGCACTGCTTTTTCA
TTGACATGGACGCCAAGGATCGCAAGTTTTCGCGGAAGCAGCTGATCTTG
ACGGCCAGCGCTTTCGTTGAGGTTGCCATATCTGCCATCCTCGCCACCTT
GCTAATGGAGCCCATGTGGGAGCTGCGCCTCTACGCCTGTGATGTTCGAA
AACTTACTGACTGGTACACATTGTTTTACAACCCCAGCCCCAATTATGAG
GCACGAGTCTACTGCACCCAGGAGGCAGTTTACCCATTGCAAACCATCGT
GCTGGTTTTCTACTTTCTGTGCCTGGTGAACATGTTTCTCATACGCCCGC
TAGTCAGCAAAATTATGGATGTGGGGGGCAGAAGCAAGGCGCCGATTTAC
TCGGCTCTTTACTTCCTGCCCCTGCTCACCTTTATCCATGCGTTAGGATG
TGGGTTGATCTATTACTCCTTTCCGTACCTTAGCGTGGCCATATCCATGG
TAGCCAATGCCATCCACTATTCCCTCAAACTGGATCAAACCCTAAAGGCA
TTGGTTCACTCGTCGGTGTGGGAGTTAAAAAACGTGGTCATCATAGCTGT
GCACTGGATGTTGTTGGCCTACGGCCTCACCTCCCTGAAATACCACTATG
CCTTTATGTGCTTGGTGCCTTCCCCACACTGTTCTATATTTTGACCGTAC
GTTTCACGGATCCTGCCGAGTTCCGGGAGCTGGAAGTCGAGAATTACAAG
CTTTCTAGACAAT
FMO03521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2126-RB | 1317 | CG2126-RB | 100..1012 | 33..945 | 4505 | 99.7 | Plus |
| CG2126-RA | 1317 | CG2126-RA | 100..1012 | 33..945 | 4505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31775983..31776196 | 489..276 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 31775748..31775920 | 661..489 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 31776247..31776383 | 277..141 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 31775559..31775693 | 796..662 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 31775354..31775504 | 945..795 | 645 | 98 | Minus |
| 3R | 32079331 | 3R | 31776443..31776553 | 143..33 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:26 has no hits.
FMO03521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:55 Download gff for
FMO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 54..972 | 33..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:19 Download gff for
FMO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 100..1018 | 33..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:49 Download gff for
FMO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2126-RA | 100..1018 | 33..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:49 Download gff for
FMO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31775348..31775502 | 797..951 | 96 | <- | Minus |
| 3R | 31775559..31775693 | 662..796 | 100 | <- | Minus |
| 3R | 31775748..31775920 | 489..661 | 100 | <- | Minus |
| 3R | 31775984..31776196 | 276..488 | 100 | <- | Minus |
| 3R | 31776249..31776382 | 142..275 | 100 | <- | Minus |
| 3R | 31776445..31776553 | 33..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:19 Download gff for
FMO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27601070..27601224 | 797..951 | 96 | <- | Minus |
| arm_3R | 27601281..27601415 | 662..796 | 100 | <- | Minus |
| arm_3R | 27601470..27601642 | 489..661 | 100 | <- | Minus |
| arm_3R | 27601706..27601918 | 276..488 | 100 | <- | Minus |
| arm_3R | 27601971..27602104 | 142..275 | 100 | <- | Minus |
| arm_3R | 27602167..27602275 | 33..141 | 100 | | Minus |
