FMO03522.5prime Sequence
688 bp (688 high quality bases) assembled on 2008-07-14
> FMO03522.5prime
TTCGTATAGCATAAAAAACAAAGTTATCAGTCGACATGTGGCCAGCCGCC
CTGAACGCCTGCTGAGACGCCGGATTGTGTACATCGTGCTGGTGGTACTG
CTGCTCATCTACGGATTCGGACACATTTTCGATCGGGACTCGTTTTCCGG
CCTGCACTATGACGAGTATGTGGTGCAGCGCACACGACCGCTCCTGTGGA
CGCAGCAGCTTCTGGCGCCGGAGGAGCAGCTCAATCGCACGCGCGGCGAT
CCCGAGGCACGCTGCCGCAACTCTGTCCAGGGCCGCCAATGGCTGGCGGA
CGAGCGAGGATTCGTGTGCCGACGCGAGGAGGTGCTAACCAACGGCTGCT
GCAACCTGGAGCTGCCCGGCATTGGATACTACAGCTGCCGCACATGCAAT
ACCAGCACCCACTGTTGCGGTGTTTATGAGTATTGCGTCTCCTGCTGCCT
GCACCCCGGACAACAGCCGCTGCTGGAGCGCGTCCTGCAGGCGCCCAACA
CGCCCAAGTACATCTTCGCCAGCGTGACGGACCACTTCGAGCTGTGCCTG
GTCAAGTGCCGCACGAACTCGCACTCCGTGGAGCACGAGAACAAGTACCG
CGATCCGGCGGCCAAGCATTGTTATGGTCTAACCGATGCGCACGAATCCC
AGCGTGATGTTGCGCCCCAGGCAAGCTTTCTAGACCAT
FMO03522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15643-RB | 1411 | CG15643-RB | 485..1120 | 36..670 | 3155 | 99.8 | Plus |
| CG15643-RA | 1692 | CG15643-RA | 485..1120 | 36..670 | 3155 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15570952..15571486 | 670..136 | 2675 | 100 | Minus |
| X | 23542271 | X | 15571563..15571665 | 137..36 | 465 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:51 has no hits.
FMO03522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:37 Download gff for
FMO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15643-RA | 434..1078 | 28..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:21 Download gff for
FMO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15643-RA | 481..1125 | 28..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:47 Download gff for
FMO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15643-RA | 481..1125 | 28..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:47 Download gff for
FMO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15570945..15571485 | 137..675 | 99 | <- | Minus |
| X | 15571564..15571669 | 28..136 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:21 Download gff for
FMO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15464978..15465518 | 137..675 | 99 | <- | Minus |
| arm_X | 15465597..15465702 | 28..136 | 95 | | Minus |
