FMO03524.5prime Sequence
479 bp (479 high quality bases) assembled on 2008-07-14
> FMO03524.5prime
CTTCGTATAGCATAAATTATACGAAGTTATCAGTCGACATGGCCAAGTAT
ATCGCCCAGATCATCGTGTTGGGCGCCCAGGCAGTGGGAAGAGCCTTTAC
CAAGGCGCTGCGCCAGGAGATCGCCGCATCTCAGGAAGCAGCACGACGGG
CGGGTGGTGGCAAGCAGGGCGACAAGAGCGCCGAGTCCAACCTGCGCACA
GGCATGACGCTGGAGGAAGCCAAGCAGATCCTGAATATAGATGACCCCAA
AAACGTGGACGCTATCACCAAGAACTACGAGCATCTGTTTCAAGTCAACG
AACGCTCCAAAGGCGGCTCCTTCTATATCCAGTCAAAGGTTTTCCGGGCG
AAAGAGCGGCTGGACCATGAGATTAAGGCCCATGAGCAGCCGAGGTCGTC
AAATACGGAAGCAGCGCAAGATACGGCGGAGGAGTCTCAGAGCAGATCGC
GGCAGCGACGCGCAAGCTTTCTAGACCAT
FMO03524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blp-RB | 964 | CG5268-RB | 235..658 | 38..461 | 2120 | 100 | Plus |
| blp-RA | 955 | CG5268-RA | 226..649 | 38..461 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15934372..15934634 | 199..461 | 1315 | 100 | Plus |
| 3R | 32079331 | 3R | 15934151..15934315 | 38..202 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:05 has no hits.
FMO03524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:52 Download gff for
FMO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 218..644 | 35..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:13 Download gff for
FMO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 235..661 | 35..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:39 Download gff for
FMO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blp-RA | 223..649 | 35..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:39 Download gff for
FMO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15934141..15934314 | 25..201 | 95 | -> | Plus |
| 3R | 15934375..15934634 | 202..461 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:13 Download gff for
FMO03524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11759863..11760036 | 25..201 | 95 | -> | Plus |
| arm_3R | 11760097..11760356 | 202..461 | 100 | | Plus |
