FMO03525.5prime Sequence
921 bp (921 high quality bases) assembled on 2008-07-14
> FMO03525.5prime
TAACTTCGTATAGCATAATTAAACGAAGTTATCAGTCGACATGGACAGAA
GGTGGAATCCAGAAAAAATCGAGGAGCAGAGCTCCCTCTTGGCAGCGGAA
TATTCCTCCAGCTCGGGAGCAGCTGCTTCCGGATCCGAGGACGAGACGGT
CACCACTAGTGGAGCGCTACGCAGCAAAGCAAAGCTGAGGAAGCGGCAGC
TAAGAAATCGCATGCCGCTTCCCAGGATGTTAAGACGCCTTGGCTGCTAC
ACGCTGAGCGCCTTCCTAATCTGTGGGCTGCTCCTCGTCTACCTGCCGCT
CGTCTACTTGGATGTACACAAGCGTAGTGCTGGTCTGCCGGATTGGACGT
CAGAGACCTCCCGCAGCATAGCTGACTACCTGGATATCGGGCTCAGTTCT
GGCGTCATTGTTCCCAAGGACTTTTGCCGGAATAAGACCTTCCTGGTAAT
CGCCGTATGCACCGGCGTGGACAACTTCATTCAGCGACATACCATCCGTG
AGACCTGGGGCAATACCACCGAGTTCAACTACCCAGCGTTTGGAAAGCTC
CATGGTCATCTCAAGGGTCACTACCTGCCGCCACTGCCGGATCGCTTAAA
GATGTACGGGGATTATTTGAGCGGCGAGGGGCAGTCTCTGACTGCCTCAG
TGCGCATTGTTTTCATTGTAGGCCGCCAGAAAGATGAGGCCATGTTGGGC
AATGAGACCCTGAATCGCATTCACATTGAATCGGAAAAAGTACAACGACA
TCATTCAGGAGAACTTCGTGGATAGCTACAACAACCTGACGCTTAAGTCT
GTGATGGCTCTAAAGCACATTAGCCGCAGTTGCTTTAATACCGCGGTCTA
CTTCCTCAAGTGCGACGACGATACCTTCATTACCACGACCGGTCCACCTA
TTGCAAGCTTTTCTAGACCAT
FMO03525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33145-RA | 2249 | CG33145-RA | 226..1093 | 33..902 | 4300 | 99.8 | Plus |
| CG33145-RB | 2316 | CG33145-RB | 226..1069 | 33..878 | 4180 | 99.8 | Plus |
| CG30036-RA | 1428 | CG30036-RA | 538..671 | 744..877 | 280 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11981824..11982372 | 878..329 | 2700 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11982436..11982726 | 329..39 | 1455 | 100 | Minus |
| 2R | 25286936 | 2R | 11978293..11978426 | 877..744 | 280 | 80.6 | Minus |
| 2R | 25286936 | 2R | 11979731..11979857 | 882..756 | 185 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:25 has no hits.
FMO03525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:08 Download gff for
FMO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33145-RA | 213..1089 | 26..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:30 Download gff for
FMO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33145-RA | 217..1093 | 26..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:23 Download gff for
FMO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33145-RA | 217..1093 | 26..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:23 Download gff for
FMO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11981733..11981756 | 879..902 | 100 | <- | Minus |
| 2R | 11981824..11982371 | 330..878 | 99 | <- | Minus |
| 2R | 11982436..11982740 | 26..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:30 Download gff for
FMO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7869238..7869261 | 879..902 | 100 | <- | Minus |
| arm_2R | 7869329..7869876 | 330..878 | 99 | <- | Minus |
| arm_2R | 7869941..7870245 | 26..329 | 98 | | Minus |
