FMO03527.5prime Sequence
1256 bp (278 high quality bases) assembled on 2008-07-14
> FMO03527.5prime
CGTATAGCATACATTATACGAAGTTATCAATCCACATGTCGGTGAAATTG
CTAATTGTATCGCTTATTTTGTGCCTCCTGCAGTCGGGCATCGTCGAGGG
TATATCATTATCACTCGGAGATATAACCCTCTTTAATGTTAACTTCAAAA
CACCAACTTTTTTGGGAAGATCCGTGGCGGTGGATAGCAATGTGCGGTTG
GAGAACGATGTGGATCCCAATATTCAGGAGGATTCACACTTGAATACCTA
CAGTCTGATAAAAAAGTACGGCTACCCGGCGGACAATCACACCTTGGAGA
CGGATGATGGATACATCCTCACCTTGCACAGGATCGCTAGACCGGAAGCA
ACGCCCGTGCTTCTGGTGCACGGACTACTGGATAGCTCAGCCACTTGGGT
GATGATGGGACCGAACAAGGGACTTGGTTACCTGCTCTACGATCAGGGGT
ACGATGTCTGGATGGCCAATGTTCGTGGCAATACGTACTCAAGAAAGCAT
GTTAAGTATAGCACCCACCATGCCAAGTTCTGGGACTTTACATTCCACGA
AATGGGAAAACATGATATACCCGCCACAATGGACTACATCCTCAATTCCA
CGGACGTAAGCCAATTGCACTACATTGGTCACTCCCAGGGAACCGTTGTG
TTCTGGATCATGGCCAGCGAGAAGCCCGAGTATATGGACAAGATCATTCT
GATGCACGGATTGGCAGCGGTGGCATTCCTCAAGCACTGCCTCAGTCCGG
TGGTCAACTTCCTGGACGAGTGGCATCTATCGGGAGCTTGTTCCTCAAGC
TGATTGGCGTTCACGAGTTTTTGCCCAAAAATGAGTTCATCAACATGTTC
AATCCGGATCATCCGCAACGAGACCACTATTACGAAAGAAGATTTGTTCA
CACGTCATCTTCCTGACCACCGGATTCCACAGCTCCAGATGAACAAAACT
ATTGCTGTCAGGAATCATTGTGTCAAATCCTCCGGGCCGGGAGCCTCCAC
CAATCAGATACAACATATTGGACAGTTCAACTGATCTGGGCGGTTCCGAC
AGTATGATCACGGTATGGTATAAAATCACTGATCTAACGGAGCATTGACC
TGCCATCTAACAACGGAGAAGAAGGTTCGGCCTAAAGCGTGTGTGACCAA
CCTGTATGATTCTTAACCCTGGCACAAACAGATTGTCGCCTCTGCCCTCA
GTCGATGATATGTCGAATGCTGAACTCCAAGCTGTACAAAGTGTCGTGCA
GGGAGG
FMO03527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip4-RA | 1580 | CG6113-RA | 123..1189 | 36..1107 | 4330 | 94.4 | Plus |
Lip4-RB | 1861 | CG6113-RB | 410..1470 | 36..1107 | 4265 | 94.1 | Plus |
Lip4-RC | 1936 | CG6113-RC | 286..1327 | 61..1107 | 4220 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10530313..10530670 | 426..783 | 1670 | 97.8 | Plus |
2L | 23513712 | 2L | 10529537..10529749 | 36..248 | 1035 | 99.1 | Plus |
2L | 23513712 | 2L | 10530078..10530257 | 249..428 | 855 | 98.3 | Plus |
2L | 23513712 | 2L | 10530856..10531124 | 788..1063 | 590 | 85.9 | Plus |
2L | 23513712 | 2L | 10532757..10532872 | 615..730 | 250 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:12 has no hits.
FMO03527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:31 Download gff for
FMO03527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6113-RA | 117..1154 | 29..1074 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:15 Download gff for
FMO03527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 119..1156 | 29..1074 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:42 Download gff for
FMO03527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip4-RA | 119..1156 | 29..1074 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:42 Download gff for
FMO03527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10529524..10529749 | 13..248 | 94 | -> | Plus |
2L | 10530078..10530255 | 249..426 | 98 | -> | Plus |
2L | 10530314..10530675 | 427..787 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:15 Download gff for
FMO03527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10529524..10529749 | 13..248 | 94 | -> | Plus |
arm_2L | 10530078..10530255 | 249..426 | 98 | -> | Plus |
arm_2L | 10530314..10530675 | 427..787 | 97 | -> | Plus |