Clone FMO03527 Report

Search the DGRC for FMO03527

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLip4-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03527.5prime Sequence

1256 bp (278 high quality bases) assembled on 2008-07-14

> FMO03527.5prime
CGTATAGCATACATTATACGAAGTTATCAATCCACATGTCGGTGAAATTG
CTAATTGTATCGCTTATTTTGTGCCTCCTGCAGTCGGGCATCGTCGAGGG
TATATCATTATCACTCGGAGATATAACCCTCTTTAATGTTAACTTCAAAA
CACCAACTTTTTTGGGAAGATCCGTGGCGGTGGATAGCAATGTGCGGTTG
GAGAACGATGTGGATCCCAATATTCAGGAGGATTCACACTTGAATACCTA
CAGTCTGATAAAAAAGTACGGCTACCCGGCGGACAATCACACCTTGGAGA
CGGATGATGGATACATCCTCACCTTGCACAGGATCGCTAGACCGGAAGCA
ACGCCCGTGCTTCTGGTGCACGGACTACTGGATAGCTCAGCCACTTGGGT
GATGATGGGACCGAACAAGGGACTTGGTTACCTGCTCTACGATCAGGGGT
ACGATGTCTGGATGGCCAATGTTCGTGGCAATACGTACTCAAGAAAGCAT
GTTAAGTATAGCACCCACCATGCCAAGTTCTGGGACTTTACATTCCACGA
AATGGGAAAACATGATATACCCGCCACAATGGACTACATCCTCAATTCCA
CGGACGTAAGCCAATTGCACTACATTGGTCACTCCCAGGGAACCGTTGTG
TTCTGGATCATGGCCAGCGAGAAGCCCGAGTATATGGACAAGATCATTCT
GATGCACGGATTGGCAGCGGTGGCATTCCTCAAGCACTGCCTCAGTCCGG
TGGTCAACTTCCTGGACGAGTGGCATCTATCGGGAGCTTGTTCCTCAAGC
TGATTGGCGTTCACGAGTTTTTGCCCAAAAATGAGTTCATCAACATGTTC
AATCCGGATCATCCGCAACGAGACCACTATTACGAAAGAAGATTTGTTCA
CACGTCATCTTCCTGACCACCGGATTCCACAGCTCCAGATGAACAAAACT
ATTGCTGTCAGGAATCATTGTGTCAAATCCTCCGGGCCGGGAGCCTCCAC
CAATCAGATACAACATATTGGACAGTTCAACTGATCTGGGCGGTTCCGAC
AGTATGATCACGGTATGGTATAAAATCACTGATCTAACGGAGCATTGACC
TGCCATCTAACAACGGAGAAGAAGGTTCGGCCTAAAGCGTGTGTGACCAA
CCTGTATGATTCTTAACCCTGGCACAAACAGATTGTCGCCTCTGCCCTCA
GTCGATGATATGTCGAATGCTGAACTCCAAGCTGTACAAAGTGTCGTGCA
GGGAGG

FMO03527.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
Lip4-RA 1580 CG6113-RA 123..1189 36..1107 4330 94.4 Plus
Lip4-RB 1861 CG6113-RB 410..1470 36..1107 4265 94.1 Plus
Lip4-RC 1936 CG6113-RC 286..1327 61..1107 4220 94.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10530313..10530670 426..783 1670 97.8 Plus
2L 23513712 2L 10529537..10529749 36..248 1035 99.1 Plus
2L 23513712 2L 10530078..10530257 249..428 855 98.3 Plus
2L 23513712 2L 10530856..10531124 788..1063 590 85.9 Plus
2L 23513712 2L 10532757..10532872 615..730 250 81 Plus
Blast to na_te.dros performed on 2014-11-28 22:53:12 has no hits.

FMO03527.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:31 Download gff for FMO03527.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6113-RA 117..1154 29..1074 94   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:15 Download gff for FMO03527.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 119..1156 29..1074 94   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:42 Download gff for FMO03527.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip4-RA 119..1156 29..1074 94   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:42 Download gff for FMO03527.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10529524..10529749 13..248 94 -> Plus
2L 10530078..10530255 249..426 98 -> Plus
2L 10530314..10530675 427..787 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:15 Download gff for FMO03527.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10529524..10529749 13..248 94 -> Plus
arm_2L 10530078..10530255 249..426 98 -> Plus
arm_2L 10530314..10530675 427..787 97 -> Plus