FMO03528.5prime Sequence
1271 bp (1078 high quality bases) assembled on 2008-07-14
> FMO03528.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGGACAAAG
CAAGCTGATCGATCCACTGTGCATCACTTGCAAGGAGTTCCAGCACCCAT
GGACGGACCACTGCGTGAGCGCCACCGCCGGTATACTACTCTCGGCCACG
CCCTACTGCCTGCGGGTCTACACAATAGTGTACGCCCTGTCCTTGCTGAT
GCGCCACCGCATTCCAAGTCGCGACGATCTGCGCAAGACGCTGCTAGGGA
TCATCCAATCGACGGCTTTTCTAGTTACTAATGCCTACACCTTTATCCTG
TACAACTGTGCGCTGCGGCACATGCTCGGGAGGTACAACTTCTACACAGT
GGCCTTTGTGCCCTGCTTTTTGGCCTCGTTTTCGGCCATTTTGGTTGAGA
GACCAGCCCGCCGACCACTACTCACTCTCTACGTGGCCAATGTGGCCACT
GAAGCGCTGTGGAAAATGGCAGAATCGAGGGGATGGGTGCGCTCCGTTCC
TAATGGACAGACACTCATCTTTGGCGTGAGCATGGCGGCGCTGCTCTACA
TCTATCGTACTGGCACCACCAAGGATTCCATCTTCAACATCCTTCGCATT
TTCGTGGGCAAGGAGGAGGCGGGGCCGATTGTCAAGTCCGGGCCCGCAGT
GCCCGGTGAGCAGCCTGCGCCAGACCGCCGACGTCCCACCGTCAGTTTTT
CGACTGTATCCGACTGGGTGCGCGTGTACAGCAATCTCATTCGCGCAAAA
CACGAAAGCTGTCGGCATCAACAGAGCTGCATTGGATACTCCCTGATGGG
TGGAATTAAACCCTTTGTGGGTGGAGTGGGTCTTCAGGTTGCCCTTAAGC
TGGTCATGAACGTCAAACGAATTACGGCTGGAAAAATGCCGTGGAAGAGA
TGATCTTCAACCGTGGTACTCTACAACTGGGCATCTTCATGGGCAGCTTT
TCATTTCTCTATAGTCGGTGTCCTGCCTGCTGCGGCACAGTTTTAACCGG
GACGATGCCAGATTTGCATTCCAGCGTCGTTAATTGCCTCTATATCCTTC
ACCCAGTATCCGGATACCACGGTAGCCCTGTATGTTATGTGGAAGGCGCC
TACAGATTCTTTGGCACAAAGGGCCAGGAACATGGGATGTGTGCCACACT
TCCCCCACCCTATGCCTTTCTTGTAACTCCTTTTCAGGCGTGCTTCATGC
GGAATATGGGACCAGGAGCCGTTGGCCCCCCAGACCTCAACACAAGAGTT
TCCTGTCGCAGGACGCACAAT
FMO03528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11737-RC | 1731 | CG11737-RC | 144..1290 | 37..1184 | 5460 | 98.7 | Plus |
| CG11737-RB | 1800 | CG11737-RB | 213..1359 | 37..1184 | 5460 | 98.7 | Plus |
| CG11737-RA | 2126 | CG11737-RA | 539..1685 | 37..1184 | 5460 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8519620..8520547 | 37..963 | 4590 | 99.9 | Plus |
| 3R | 32079331 | 3R | 8520602..8520739 | 963..1099 | 625 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:12 has no hits.
FMO03528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:59 Download gff for
FMO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11737-RA | 534..1664 | 29..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:25 Download gff for
FMO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11737-RB | 204..1334 | 29..1158 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:07 Download gff for
FMO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11737-RA | 530..1660 | 29..1158 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:07 Download gff for
FMO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8519611..8520549 | 29..964 | 99 | -> | Plus |
| 3R | 8520604..8520744 | 965..1105 | 97 | -> | Plus |
| 3R | 8520802..8520830 | 1106..1135 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:25 Download gff for
FMO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4345333..4346271 | 29..964 | 99 | -> | Plus |
| arm_3R | 4346326..4346466 | 965..1105 | 97 | -> | Plus |
| arm_3R | 4346524..4346552 | 1106..1135 | 93 | == | Plus |
