FMO03529.5prime Sequence
1170 bp (1050 high quality bases) assembled on 2008-07-14
> FMO03529.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCGTCAAGTTG
TGCGCTATCCTTTTGGCCCTTGGCCTTAGTCAGGCCATTGCGTATCCGCC
CCTGCAACTTAGTAATCCGCACCAGAACCTAGTGCAGTTCCTGATACAAT
CACGTGATCTCGGCAACGATGGTGGACATACCCTTGAATGCTTGGATTAT
TATCTTCCCCTGCTGAACGACGTTGTGGAGACCTACAAGGCTGATTTAAA
TGCGTGTTTGGAAACAGCTAGTCAGGAGGTCTCACAGATCAACGACAATA
CCAAGGAAGAACGAGATGCCATCGATGCCTCAGCCAAGAGCTCCTGCGAT
GCCCTCACCGCATGTAGTACAAAGGAAGCGGCCATAGATTACTTCCAGTG
CTACAGTGAAGCCGGCTCCAACAACACCAAAACCATGTTCACCATCTCCG
CTAACGCTTCGGAGCTGCTGGCTGCTGTGGAGGAGGAAGTGCGTCTCATC
AAGGTGAAGGAAGAGGTGTGCACCAACAAGACCCAGAGGGCCTATGGAGA
GAGCTACGGTCAGCTGTACGCGGATTTGGGTGATTGCATTGCTGGCGCTC
CAATTCCATCGGAATCCACAAGCACCCAGGCCTCCTCCACGGATTCTTCG
ACTGATTCGACGTCCGCTTCCACCGAATCCTCTACTGATTCGTCCTCCGT
TTCCACCGAATCTTCTACTGATTCGTCCTCCGTTTCCACCGAATCTTCTA
CTGATTCCTCGACTGATTCTTCCTCCGCTTCCACCGAATCGTCTACTGAT
TCGTCCTCCGTCTCCACTGAATCCTCAACGGATTCCTCAACTGATTCGTC
CTCCGTGTCCACCGAATCATCCACTGATTCGTCGACAGACTCCTCATCCG
CTTCCACCGAATCCTCTACTGAATCCTCGTCTGATTCGCCCTCGATCTAC
CGAATCCTCTACTGATTCCTCATCTGTTTCCACGGAATCACACAGTAGTG
TGAAAGAGCGCGCCTGAGAGACTTGAATCCCTCTCCTCTCAACGCATGAC
TCAGAAGATCTAGATCTACCGTGCTAAATCACGCAGCTTCTAGACATCGT
GGCCGCGGCAGTATGCTACTATCTAATCAATCTAATCACTGCCTAGGAGA
ATCCTGGACTATGTAGACGT
FMO03529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10911-RA | 1221 | CG10911-RA | 61..1080 | 36..1042 | 4785 | 98.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 694..1007 | 636..937 | 515 | 78 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 661..962 | 669..980 | 465 | 77.4 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 770..995 | 667..880 | 455 | 81 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 692..830 | 745..883 | 425 | 87.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 667..894 | 753..990 | 410 | 79.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 778..947 | 642..799 | 400 | 83.5 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 859..1022 | 678..829 | 335 | 81.1 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 703..848 | 834..989 | 270 | 79.7 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 937..1016 | 633..712 | 205 | 83.8 | Plus |
| CG10911-RA | 1221 | CG10911-RA | 946..1016 | 675..745 | 205 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18052755..18053332 | 989..414 | 2795 | 99.3 | Minus |
| 2R | 25286936 | 2R | 18053628..18054006 | 414..36 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 18052764..18053077 | 937..636 | 485 | 77.7 | Minus |
| 2R | 25286936 | 2R | 18052863..18053001 | 805..667 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052941..18053079 | 883..745 | 425 | 87.1 | Minus |
| 2R | 25286936 | 2R | 18052809..18053110 | 980..669 | 405 | 76.8 | Minus |
| 2R | 25286936 | 2R | 18052824..18052993 | 799..642 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052947..18053104 | 922..753 | 365 | 82.4 | Minus |
| 2R | 25286936 | 2R | 18052749..18052912 | 829..678 | 305 | 80.5 | Minus |
| 2R | 25286936 | 2R | 18052923..18053068 | 989..834 | 210 | 78.5 | Minus |
| 2R | 25286936 | 2R | 18052755..18052834 | 712..633 | 205 | 83.8 | Minus |
| 2R | 25286936 | 2R | 18052755..18052825 | 745..675 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:04 has no hits.
FMO03529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:43 Download gff for
FMO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 59..1082 | 36..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:38 Download gff for
FMO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1084 | 36..1046 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:19 Download gff for
FMO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10911-RA | 61..1084 | 36..1046 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:19 Download gff for
FMO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18052687..18053332 | 414..1046 | 97 | <- | Minus |
| 2R | 18053629..18054006 | 36..413 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:38 Download gff for
FMO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13940192..13940837 | 414..1046 | 97 | <- | Minus |
| arm_2R | 13941134..13941511 | 36..413 | 100 | | Minus |
