FMO03530.5prime Sequence
1238 bp (1022 high quality bases) assembled on 2008-07-14
> FMO03530.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGATCTGTTGTTTCTC
AGCCGGCGAATTTTCCTGGGCGATGGCAGCCAAAACGCCCTGATCCATGG
CGGCATCATCGTGGATACAGAGGGCATTATACGCAGGGTGCTACGTTCAC
CGCAGGAGGTTAATACCTATTTGTACAACACAGAATCCGAATCGGTTTAC
GATTTCGGGGACCTGGTACTGATGCCCGGTCTGATTGATCCCAATGTCCA
TATCAACGAGCCGGGTCGCAAGGACTGGGAGGGTTTTGCAACTGCCACCA
AGGCGGCGGCCGCCGGTGGCTTCACCACAATCATCGATCGACCCACCAAC
GCGCAACCACCCACCGTTAGTGTGGCCCATCTCAAGGCCAAAACGTCGAC
GGCCCGTGGAAAGATCTATGTGGACGTGGGTTTTTGGGGCGGACTAGTGC
CCGGAAACGGGGATCAGCTGGCTGCACTTTTGGGTGCCGGTGTCATGGGT
CTGCAGTGCACATTGTGCGATCCCGCGGCGCCCGTCTCTCAGGAATTTCC
CGCCGTAAACGAATCTCAGCTGGAGGAGGCTCTTTCCCAGTTGGACAAGG
ATCAGGCTGAAGGGGAAGCAATCGTAGCGGTGCATGCTGAGCTGCCGCTG
ACCACCGAAATCCATCCGGACGAGGAGGCGCCCCGGGAGTATGGCACTTT
CCTGGTGACTCGTCCACCCCAAATGGAGATTTCCGCGACGCAGTTGCTCT
GCCGGCTGGCGAATCGCCACCCGCGGCGCTGCATACACATCCCTCAACTG
CAGCAGCGGCGAAAGTCTGCCGCTGGTGGGGGAGTGTCGACGGCAGGGCG
GGAATCTAACGGTGGGACACCTGTCCGCATTACCTGGCCCTGGCGGCCGA
GGATGTGCCCGATTGCGGCACGGAGTTTAAAGACCTGGGCCACCGATTCG
GGAGCGTCGCAATCAGGAGCATTGTTGGCAGGCTCTGAGACCGGGCCGAG
CCATCCGCATGATTGGCAGTGATCACTCGCGGCGACGCCGGGTTGCCAGG
TGCTCTTCACTGCGGAAGGGGGCGTGGCCAACTTCCTTGAGGCTTGGCCC
GGGCATCCACTCGTGGCCATCTCAGCCTGGTTCGGTCGATTGACAGGCGC
CGCTAATCGGAGGAGATATCGCAACTGAACCATCCGGTAACTCATTCTCG
TAAGTGCAGAACCGGCAAAACTTGGTGCGGCTGTGTTC
FMO03530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6106-RB | 2446 | CG6106-RB | 23..1141 | 33..1160 | 5035 | 97.3 | Plus |
| CG6106-RA | 1878 | CG6106-RA | 23..1141 | 33..1160 | 5035 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18359064..18359558 | 138..632 | 2475 | 100 | Plus |
| X | 23542271 | X | 18359930..18360408 | 629..1114 | 1795 | 95.1 | Plus |
| X | 23542271 | X | 18358903..18359008 | 33..138 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:54 has no hits.
FMO03530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:32 Download gff for
FMO03530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 19..1098 | 30..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:43 Download gff for
FMO03530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 21..1100 | 30..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:12 Download gff for
FMO03530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6106-RA | 21..1100 | 30..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:12 Download gff for
FMO03530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18358901..18359008 | 30..138 | 99 | -> | Plus |
| X | 18359065..18359555 | 139..629 | 100 | -> | Plus |
| X | 18359931..18360388 | 630..1091 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:43 Download gff for
FMO03530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18252934..18253041 | 30..138 | 99 | -> | Plus |
| arm_X | 18253098..18253588 | 139..629 | 100 | -> | Plus |
| arm_X | 18253964..18254421 | 630..1091 | 95 | -> | Plus |
